Machine learning and computer vision approaches for phenotypic profiling

BT Grys, DS Lo, N Sahin, OZ Kraus, Q Morris… - Journal of Cell …, 2017 - rupress.org
… have been developed to aid in phenotypic classification and clustering of data acquired from
computer vision and machine-learning methods for generating and categorizing phenotypic

Machine Learning and Computer Vision Approaches for Phenotypic Profiling in Yeast

N Sahin - 2021 - search.proquest.com
… These algorithms can be trained to recognize subtle differences in the phenotypic profile
space to either explore novel phenotypes or learn to distinguish known phenotypes with …

Computer vision for high content screening

OZ Kraus, BJ Frey - Critical reviews in biochemistry and molecular …, 2016 - Taylor & Francis
… these perturbations and cellular phenotypes. In functional genomics … In the following sections
we review the computer vision … (C) Clustering and profiling: unsupervised machine learning …

Computer vision and machine learning enabled soybean root phenotyping pipeline

KG Falk, TZ Jubery, SV Mirnezami, KA Parmley… - Plant methods, 2020 - Springer
… This limitation in selecting for root phenotypes in soybean and other pulse, oilseed and
cereal … root shape profiles enabling the user to select which profile was most appropriate [107]. …

Computer vision, machine learning, and the promise of phenomics in ecology and evolutionary biology

MD Lürig, S Donoughe, EI Svensson… - Frontiers in Ecology …, 2021 - frontiersin.org
… extol computer vision (CV; for a definition of terms in italics see see Box 1), the automatic
extraction of meaningful information from images, as a promising toolbox to collect phenotypic

Image-based cell phenotyping with deep learning

A Pratapa, M Doron, JC Caicedo - Current opinion in chemical biology, 2021 - Elsevier
… recognition, profiling, and prediction of visual phenotypes to … Capturing the complexity and
subtlety of cellular phenotypes … deep learning–based computer vision methods has enabled …

Computer vision profiling of neurite outgrowth dynamics reveals spatiotemporal modularity of Rho GTPase signaling

L Fusco, R Lefort, K Smith, F Benmansour… - Journal of cell …, 2016 - rupress.org
… We present NeuriteTracker, a computer vision (CV) … phenotypic categories at the static
level, we used a mathematical model that selects specific cells with a highly penetrant phenotype

Phenotypic profiling of high throughput imaging screens with generic deep convolutional features

PT Jackson, Y Wang, S Knight, H Chen… - … on Machine Vision …, 2019 - ieeexplore.ieee.org
… of deep learning techniques in computer vision, natural language … Morphological profiling
is a complementary approach that can be … provided by morphological profiling, it is sometimes …

Large‐scale image‐based screening and profiling of cellular phenotypes

N Bougen‐Zhukov, SY Loh, HK Lee, LH Loo - Cytometry Part A, 2017 - Wiley Online Library
… Most of the feature selection and mapping methods developed for high-dimensional data
in the data mining, computer vision, document classification, and bioinformatics fields are …

Computer vision and data-analysis solutions for phenotypic screening of small model organisms

L Thomas - 2021 - archiv.ub.uni-heidelberg.de
… Beyond deep-learning, computer vision could benefit bioimage analysis in many more
ways. However, those methods were originally addressed to computer vision experts and …