… , which could perform fast reference-based assemblies on … bioinformatic pipeline called
HAVoC (Helsinki university Analyzer for Variants of Concern). HAVoC can reference assemble …

… Clinical NGS results rely heavily on the bioinformatics pipeline for identifying genetic
variation in complex samples. The choice of bioinformatics algorithms, genome assembly, and …

… ), an automated bioinformatics pipeline optimized for whole-genome assembly of viral
sequences … For the reference-based assembly of SARS-CoV-2, VPipe generated 22 consensus …

… Although the functionalities and assembly of bioinformatics strategies applied in different …
Consensus on bioinformatic strategies for NGS HIVDR data processing. This consensus may …

… We report the optimization of circular consensus sequencing (CCS) to … De novo genome
assembly using CCS reads alone … outperforming assembly with less-accurate long reads. …

… and variation analysis limits the ability of individual labs to perform further bioinformatics …
contain smaller contigs compared to those obtained from overlap-layout-consensus algorithms. …

… on to the consensus. Therefore, there is a need for consensus polishing for assemblies
produced … A base-level correction-free assembly pipeline is developed by directly analyzing and …

… The assemblies … assembly using the models r941_min_sup_g507 and r10.4.1_e82_400bps_sup_g615.
Finally, Abricate (v1.0.0) was utilized to screen the resulting corrected assembly …

… Such data allow laboratories to more accurately test the performance of clinical bioinformatics
pipelines without sequencing additional cases. For example, clinical laboratories may use …

… During reference-based assembly (secapr reference_assembly) we mapped the reads
against the consensus sequence of the contig MSAs for all loci. We found an average of 454 …