… metagenomic assembly strategies, pipelines and … consensus assembly has high accuracy
exceeding that of short-read data sets because of the signal-based polishing of the consensus …

… , the SURPI pipeline continues to the de novo assembly step, … Increased robustness of the
de Brujin graph-based assembly … , along with the final assembled contigs, are subjected to a …

… MHC class I allele discovery approach using circular consensus sequencing (CCS) with
single-… eliminates the ambiguity introduced by assembly of short, highly-similar allele fragments. …

… pipelines and there is a lack of agreement regarding best practices. Here, we compared six
bioinformatic pipelines … We assessed the sensitivity, specificity, and degree of consensus of …

… through lower than 100% consensus and distracting gene calling due to … Before embarking
on bioinformatic genome analysis, … On this level, all of the pipelines we tested performed very …

… assembly step, the reads are assembled as long consensus … also used for the hybrid assembly
pipeline that closes the gaps … The existing hybrid/long-read-only assembly pipelines are …

… and links to useful resources to learn basic bioinformatics, to build a toxin database from public
… and a consensus quality score (QV) of 36.78, which indicates an accurate assembly with …

… identified while constructing the consensus, the nucleotide call … assembly speed and quality,
requiring the shortest assembly … amount of data to assemble but still preserved enough for …

… Select all the contigs created at the assembly step, then use File → Export → Consensus
Sequences as Single File command, making sure to check the box for “export quality scores” (…

… The general consensus from these studies is that in order to reconstruct a broad range of …
the EvidentialGene tr2aacds pipeline maximises the diversity of de novo assembled transcripts …