… identified while constructing the consensus, the nucleotide call … assembly speed and quality,
requiring the shortest assembly … amount of data to assemble but still preserved enough for …

… A programmatically automated de novo transcriptome assembly pipeline was developed for
this … , perhaps in an attempt to narrow down the contigs to a consensus transcript sequence. …

… In addition to availability of sequences, bioinformatics tools … assembly, the output files of
CAP3 were used in the pipeline … we could line up the consensus assembly with genotype call for …

… assembled on contigs of length N50 or longer. However, such measures do not assess assembly
… an excellent gene predictor training set for use as part of genome annotation pipelines. …

… Most current pipelines do not include support for co-assembling … , not requiring any technical
or bioinformatic knowledge, also makes it … SqueezeMeta generates a consensus taxonomic …

… pipelines allowing the integrated use of both data types are not available yet. Automated
bioinformatic pipelines have … Meta-omic Pipeline, the first open source de novo assembly-based …

… novo assembly algorithm suitable for generating consensus … , a program for de novo
consensus assembly of genetically … outputs consensus sequence(s) and for each consensus …

… based bioinformatics pipeline NGSpeciesID can be used to generate an accurate consensus
… read variation distribution around the generated consensus sequences to understand what …

… consensus and multi-alignment information for the assembly. Each contig sequence is
preceded by a header line which starts with ##, followed by the gapped consensus … pipeline, we …

… assembly and annotated with respect to the genes in which they reside using Annovar [25].
Prior to being submitted for prediction, they were converted to the NCBI37/hg19 assembly …