… for de novo assembly owing to the lack of bioinformatics tools … Our assembly pipeline runs
this correction process multiple … Our consensus procedure starts with the initial draft assembly…

… a consensus assembly from multiple input assemblies of the … Trycycler assemblies contained
fewer errors than assemblies … As assembly is often the first step in bioinformatic pipelines, …

… the standard overlap-layout-consensus approach to genome assembly, a paradigm that treats
… ] using a data analysis pipeline initially developed for Sanger data. Specifically, the ESTs …

… Finding the path with the highest probability reveals the consensus of the aligned reads to
… a Canu-generated assembly is the best pipeline (ie one can construct the most accurate …

… genome and then used to construct an alternative consensus sequence [21]. This approach
… can be achieved with our reference-guided de novo assembly pipeline using ALLPATHS-LG…

… On the other hand, limitations of de novo assembly include increased … consensus sequences
in case an alternative aligner is chosen. We use lowercase characters in the consensus …

… pipeline combining six methods in a consensus strategy to assess the contamination level of
440 genome assemblies … , [14]), bioinformatic procedures are still needed to recognize and …

… our assembly with the assembly produced by the NCTC pipeline (HGAP followed by Circlator)
on 10 randomly selected data sets. We verify that the assemblies … to generate consensus …

… were included in the assembled consensus while also reducing the … pipeline enables the
selection of the best available high confidence (quality) consensus sequences from assemblies …

… challenges have been combined into various bioinformatics pipelines, such as mothur, …
paired-end assembly, by merging both forward and reverse reads into one consensus sequence, …