13 天前 - … a robust bioinformatics pipeline that includes quality control, read mapping, consensus
… efficiently processes raw sequencing data, ensuring high-quality genome assemblies …

34 天前 - … by the rapid development of the appropriate bioinformatics tools. The second-generation …
The result of the pipeline analysis was the successful assembly of 96 consensus …

37 天前 - … choice significantly impacts assembly time, with CPU and … of 2,000 nucleotides
required for quality assembly. A 4,000-… produced only consensus assemblies. Strainline and …

68 天前 - … In summary, for Illumina, the comparative analysis of the obtained consensus … In
parallel to the refinement of the reference-based genome assembly pipelines, we integrated …

116 天前 - … consensus genome assembly. In Table 2, we show the comparative performance of
the four pipelines … : in one set, the fixed-reference pipelines were used 266 with the default …

235 天前 - … The bioinformatic analysis comprised read assembly and consensus sequence
mapping to reference genomes and variant identification, and utilized pipelines including …

242 天前 - … We envisage that this pipeline could be used to integrate multiple datasets and …
and consensus networks that can guide our understanding of microbial community assembly in …

243 天前 - … of the obtained consensus sequences using INSaFLU … -based genome assembly
pipelines, we integrated other … ONT data, through draft assembly using Raven [54], and by …

263 天前 - … an in-house developed bioinformatics pipeline and constructed phylogenetic trees
… , followed by the assembly of 2,195 bp long concatenated consensus sequences of the …

263 天前 - … , we set up a benchmarking pipeline to highlight different aspects of quaternary …
a consensus baseline to estimate quaternary structure accuracies of full assemblies for both, …