… fast reference-based assemblies on raw SARS-CoV-2 sequences in addition to … assemble
raw sequence reads and assign the corresponding lineages to SARS-CoV-2 sequences…

… in consensus genome assemblies of 72 matched SARS-CoV-2-positive specimens sequenced
at … Here, we compared the resulting consensus sequences of 72 samples sequenced at …

… assembly strategies, we present PipeCoV, an open-source and efficient pipeline that provides
assembly to variant identification of SARS-CoV-2 … of the consensus sequences assembled …

… and information processing for SARS-CoV-2 amplicon sequencing data. Our workflow
includes reports on the quality of sequencing experiments, quality of consensus genome, and the …

… We performed 6648 de novo assemblies of 416 SARS-CoV-2 … -end sequencing reads and
compared the assembly quality of … Consensus and greedy graph method. The quality of the …

… might help to improve the calling of consensus sequences, or to understand and account for
… that was not trimmed from the reads prior to assembly (see [1,6] and comment above by @…

… (SARS-CoV-2 Illumina GeNome Assembly Line; SIGNAL). One sample showed poor
SARS-CoV-2 genome coverage and consensus, … SARS-CoV-2 genome coverage and consensus, …

… of NGS data—based on Overlap Layout Consensus, de Bruijn graphs or, in general on …
the reference genome assembly of SARS-CoV-2 and retaining only SARS-CoV-2-like reads. …

… SARS-CoV-2 genome obtained from Rosetta's protocol for Fragment Assembly of RNA with
Full-Atom Refinement, version 2 (… SL2 based on the SARS-CoV-1 sequence as an additional …

… , virus genomic sequence assembly is often a demanding task. Translating SARS-CoV-2 raw
… Briefly, sample parameters for consensus sequence reconstruction are designed to call the …