Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus

E Rodgers-Melnick, SP Mane… - Genome …, 2012 - genome.cshlp.org
… resulting from a recent whole genome duplication to a set of … Whole genome duplicates are
700 bp longer and are … following whole genome duplication, while whole genome duplicate …

Genome evolution and speciation: toward quantitative descriptions of pattern and process

P Nosil, JL Feder - Evolution, 2013 - academic.oup.com
… Helianthus sunflowers GBS-based genome scan coupled with draft whole genome … even
qualitative descriptions of genomic patterns served useful purposes. In contrast, we can now …

Evolution of gene expression after wholegenome duplication: New insights from the spotted gar genome

J Pasquier, I Braasch, P Batzel, C Cabau… - … Evolution, 2017 - Wiley Online Library
… In contrast, our data also suggest that the average expression of duplicated teleost genes
often approximate the patterns and levels of expression for gar genes, consistent with …

[HTML][HTML] Genome-wide patterns of genetic variation within and among alternative selective regimes

Y Huang, SI Wright, AF Agrawal - PLoS Genetics, 2014 - journals.plos.org
Contrasting the two constant treatments, we found the expected patterns of local adaptation,
… q-value) bins using data from the whole genome. To compare the magnitude of the ratios for …

Novelty and convergence in adaptation to whole genome duplication

M Bohutínská, M Alston, P Monnahan… - … and Evolution, 2021 - academic.oup.com
… selection, contrasting the genomic response to WGD in C. amara with that of A. arenosa. …
gene-level evolutionary convergence is likely following WGD, we performed genome scans for …

Different genomic changes underlie adaptive evolution in populations of contrasting history

SG Seabra, I Fragata, MA Antunes… - … and evolution, 2018 - academic.oup.com
evolution at the genomic level, we are currently lacking empirical studies that investigate the
impact of more contrasting evolutionary … The Whole Genome Shotgun project corresponding …

Contrasting evolutionary dynamics between angiosperm and mammalian genomes

E Kejnovsky, IJ Leitch, AR Leitch - Trends in Ecology & Evolution, 2009 - cell.com
… that fundamentally different life strategies and development feedback on the genome exist,
influencing dynamics and evolutionary trajectories at all levels from the gene to the genome. …

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

DJ Macqueen, IA Johnston - Proceedings of the Royal …, 2014 - royalsocietypublishing.org
Whole genome duplication (WGD) is often considered to be mechanistically associated with
species diversification. Such ideas have been anecdotally attached to a WGD at the stem of …

Adaptive radiation of Darwin's finches revisited using whole genome sequencing

MS Almén, S Lamichhaney, J Berglund, BR Grant… - …, 2016 - Wiley Online Library
… In contrast, there is at present no suggestive evidence that additional ALX1 haplotypes have
contributed to beak evolution among the Darwin's finches. Although it appears that ALX1 is …

[HTML][HTML] Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

DJ Begun, AK Holloway, K Stevens, LDW Hillier… - PLoS …, 2007 - journals.plos.org
… In contrast to the positive correlation between coding density and divergence, we found a …
Overall, the contrasting correlations between coding density and polymorphism versus …