Whole genome sequencing of cotton—a new chapter in cotton genomics

XF Cao - Science China life sciences, 2015 - Springer
… for 67.2% of the tetraploid cotton genome. The findings have been online … Genome
sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome

Recent advances in cotton genomics

HB Zhang, Y Li, B Wang… - … Journal of plant genomics, 2008 - Wiley Online Library
cotton genomics research. The reviewed areas include DNA markers, genetic maps, mapped
genes and QTLs, ESTs, microarrays, gene … of genomic sequences available for cotton and …

Genome sequence of the cultivated cotton Gossypium arboreum

F Li, G Fan, K Wang, F Sun, Y Yuan, G Song, Q Li… - Nature …, 2014 - nature.com
… Using these anchors, we found that the 2 cotton genomes shared 780 syntenic blocks
that covered 73% and 88% of the assembled chromosomes in G. arboreum and G. raimondii, …

Whole genome sequencing reveals rare off‐target mutations and considerable inherent genetic or/and somaclonal variations in CRISPR/Cas9‐edited cotton plants

J Li, H Manghwar, L Sun, P Wang… - Plant biotechnology …, 2019 - Wiley Online Library
plants. To identify on- and off-target mutation in an edited crop, we described whole genome
sequencing (WGS) of 14 Cas9-edited cotton plants … wild-type (WT) plants. In total, 4188–…

Progress in genome sequencing will accelerate molecular breeding in cotton (Gossypium spp.)

R Yan, C Liang, Z Meng, W Malik, T Zhu, X Zong… - 3 Biotech, 2016 - Springer
… Thus, the Cotton Genome Consortium has made rapid and significant progress in whole
genome sequencing studies in the last decade. Developments in cotton genome sequencing

Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome …

G Huang, Z Wu, RG Percy, M Bai, Y Li… - Nature …, 2020 - nature.com
sequencingcotton genomes, we revealed the origin of cotton A-genomes, the occurrence
of several transposable element (TE) bursts and the genetic divergence of diploid A-genomes

Sequencing multiple cotton genomes reveals complex structures and lays foundation for breeding

Y Pan, F Meng, X Wang - Frontiers in Plant Science, 2020 - frontiersin.org
… This genome sequence covered 1.395 Gb of the subgenome A t and 0.776 Gb of the D t .
The draft genome sequences of allotetraploid cotton species had been highly fragmented and …

Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution

F Li, G Fan, C Lu, G Xiao, C Zou, RJ Kohel, Z Ma… - Nature …, 2015 - nature.com
… The MIPS database is constructed strictly according to the published cotton genomes whereas
Repbase contains all repeat sequences from various plant genomes, further accounting …

Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches

C Bi, AH Paterson, X Wang, Y Xu, D Wu… - BioMed Research …, 2016 - Wiley Online Library
… whole genome contigs, we used NCBI-BLASTn with default parameters to search against
the reference mt genome sequences of 368 plants from NCBI Organelle Genome Resources (…

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

M Wang, L Tu, D Yuan, D Zhu, C Shen, J Li, F Liu… - Nature …, 2019 - nature.com
Sequence comparisons between the two cotton genomes … We found 170.2 Mb of genome
sequence identified as … This unexpected number of paracentric/pericentric inversions in cotton