[HTML][HTML] Major impacts of widespread structural variation on gene expression and crop improvement in tomato
Structural variants (SVs) underlie important crop improvement and domestication traits.
However, resolving the extent, diversity, and quantitative impact of SVs has been challenging. …
However, resolving the extent, diversity, and quantitative impact of SVs has been challenging. …
[HTML][HTML] The role of genomic structural variation in the genetic improvement of polyploid crops
… Polyploids harbor great potential for crop improvement. The presence of extra gene copies
… polyploid than in diploid crops pose some challenges to polyploid crop improvement. These …
… polyploid than in diploid crops pose some challenges to polyploid crop improvement. These …
Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs
… such as structural variations (SVs), one of the major determinants of genetic diversity within
a species. In this review we summarize the current literature on crop … and their variations. We …
a species. In this review we summarize the current literature on crop … and their variations. We …
[HTML][HTML] Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement
… crops globally, and it shows remarkable genetic diversity. Knowledge of this diversity could
help in crop improvement… SK, we identified 80,614 polymorphic structural variants across 521 …
help in crop improvement… SK, we identified 80,614 polymorphic structural variants across 521 …
[HTML][HTML] Exploring and exploiting pan-genomics for crop improvement
… Genetic variation, particularly structural variation, can result in substantial variation in functional
gene complement and gene content between individuals of the same species. To better …
gene complement and gene content between individuals of the same species. To better …
Genomic innovation for crop improvement
… , for the identification of structural variation. Skim sequencing consists of low-coverage (for
example, 5–10×) Illumina reads and presents a cost-effective way of identifying genetic …
example, 5–10×) Illumina reads and presents a cost-effective way of identifying genetic …
[HTML][HTML] High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement
Z Ma, Y Zhang, L Wu, G Zhang, Z Sun, Z Li, Y Jiang… - Nature Genetics, 2021 - nature.com
… of structural variations in genotype-to-phenotype relationships and their potential utility in
crop improvement. … structural variations by comparing these structural variations to the specific …
crop improvement. … structural variations by comparing these structural variations to the specific …
Structural variations in plant genomes
… high-throughput genotyping related to the development of genomic resources and deployment
of genomics assisted breeding for crop improvement in the semi-arid tropics of the world. …
of genomics assisted breeding for crop improvement in the semi-arid tropics of the world. …
Connecting genome structural variation with complex traits in crop plants
… Identifying the extent and impact of structural variants in crop … origins of structural genome
variation in crops from ancient … to assay such variants in crop populations in order to find …
variation in crops from ancient … to assay such variants in crop populations in order to find …
Exploiting induced and natural epigenetic variation for crop improvement
NM Springer, RJ Schmitz - Nature reviews genetics, 2017 - nature.com
… additional sources of variation within a species that could be captured or created for crop
improvement. It will be important to understand the sources of epigenetic variation and the …
improvement. It will be important to understand the sources of epigenetic variation and the …
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