过去一年中添加的文章,按日期排序

Ensemble Machine Learning and Predicted Properties Promote Antimicrobial Peptide Identification

G Zhong, H Liu, L Deng - Interdisciplinary Sciences: Computational Life …, 2024 - Springer
5 天前 - … Although some computational methodologies have been proposed to identify potential
… which ensembles deep learning and statistical learning methods to screen peptides with …

Acp-Esm2: Anticancer Peptide Prediction Using Protein Language Models

S Gao, X Li, F Cui, Q Zhang, Q Zou, Z Zhang - Available at SSRN 4878967 - papers.ssrn.com
9 天前 - … However, the identification of anticancer peptides through … In this study, we propose
ACP-ESM2, a deep learning model … feature information from peptide sequences using the …

HIGH RESOLUTION MODELING OF ANTIBODY AND T CELL RECEPTOR RECOGNITION USING DEEP LEARNING

R Yin - 2024 - drum.lib.umd.edu
11 天前 - … the power of deep learning tools toward … -art deep learning algorithm, AlphaFold,
in modeling protein-protein complexes. Focusing on antibody-antigen complexes, I identified

Short catalytic peptides with intrinsic esterase activity

P Janković - 2024 - unirepository.svkri.uniri.hr
11 天前 - peptides are explored: (i) the incorporation of amino acids from the catalytic triad
and (ii) an approach involving metal ions. To identify … representation of peptides and it can be …

Using Deep Learning to Understand and Design Heterogeneous Materials

Z Yang - 2024 - dspace.mit.edu
12 天前 - … We introduce a framework that integrates multiple deep learning (DL) models to
tackle … foams showcasing structural heterogeneity to polypeptide self-assemblies exhibiting …

VmmScore: An umami peptide prediction and receptor matching program based on a deep learning approach

M Liu, J Yang, Y He, F Cao, W Li, W Han - Computers in Biology and …, 2024 - Elsevier
13 天前 - … This study introduces a computational strategy to tackle the challenge of identifying
optimal umami receptors for these peptides. Our VmmScore algorithm includes two integral …

SpecEncoder: deep metric learning for accurate peptide identification in proteomics

K Liu, C Tao, Y Ye, H Tang - Bioinformatics, 2024 - academic.oup.com
14 天前 - … In this paper, we present SpecEncoder, a novel metric learning model for peptide
identification in mass spectrometry-based proteomics. SpecEncoder addresses the limitations …

3D imaging of immune cell reaction in pancreatic cancer organoids: the response to a nanovaccine therapy

N Ferreira - 2024 - ediss.uni-goettingen.de
15 天前 - … in vitro T-cell-based peptide stimulation was conducted using unfractionated …
peptide-stimulated T cells on PDO growth and proliferation. The combination of Mesothelin-peptide

mACPpred 2.0: Stacked deep learning for anticancer peptide prediction with integrated spatial and probabilistic feature representations

VK Sangaraju, NT Pham, L Wei, X Yu… - Journal of Molecular …, 2024 - Elsevier
16 天前 - peptides (ACPs), naturally occurring molecules with remarkable potential to target
and kill cancer cells. However, identifying … In the past, several web-based machine learning (…

LooMS: a novel peptide identification tools for data independent acquisition

J Zhong, JR Wu, X Zeng, M Moran, B Ma - bioRxiv, 2024 - biorxiv.org
16 天前 - … overfitting in peptide identification with deep learning models. … 43 features for training
deep learning models, which cover … DiaNN, another leading peptide identification tool. Our …