Learning groupwise multivariate scoring functions using deep neural networks
… To that end, we propose Groupwise Scoring Function (GSF) as an instance of the class of
multivariate functions that is parameterized by deep neural networks. A GSF learns to score a …
multivariate functions that is parameterized by deep neural networks. A GSF learns to score a …
Protein–ligand scoring with convolutional neural networks
… deep machine learning techniques for protein–ligand scoring. We describe convolutional
neural network (CNN) scoring functions … scoring function automatically learns the key features …
neural network (CNN) scoring functions … scoring function automatically learns the key features …
Sfcnn: a novel scoring function based on 3D convolutional neural network for accurate and stable protein–ligand affinity prediction
Y Wang, Z Wei, L Xi - BMC bioinformatics, 2022 - Springer
… , generating a new scoring function model based on 3D convolutional neural network. … Our
scoring function model achieved a root mean squared error (RMSE) of 1.3263 and 1.4518 on …
scoring function model achieved a root mean squared error (RMSE) of 1.3263 and 1.4518 on …
Deep scoring neural network replacing the scoring function components to improve the performance of structure-based molecular docking
L Yang, G Yang, X Chen, Q Yang, X Yao… - ACS chemical …, 2021 - ACS Publications
… deep learning networks. DeepVS used convolutional neural networks to obtain composite
features of … (35) By comparing the network differences between Deep Scoring and these two …
features of … (35) By comparing the network differences between Deep Scoring and these two …
A review of deep-neural automated essay scoring models
M Uto - Behaviormetrika, 2021 - Springer
… scoring (AES) is the task of automatically assigning scores to essays as an alternative to
grading … typically rely on manually designed features, deep neural network (DNN)-based AES …
grading … typically rely on manually designed features, deep neural network (DNN)-based AES …
An introduction to convolutional neural networks
K O'shea, R Nash - arXiv preprint arXiv:1511.08458, 2015 - arxiv.org
… will still express a single perceptive score function (the weight)… Convolutional Neural Networks,
explaining the layers required to build one and detailing how best to structure the network …
explaining the layers required to build one and detailing how best to structure the network …
Visualizing convolutional neural network protein-ligand scoring
… Convolutional neural network (CNN) scoring functions in particular have shown promise in
… In the next sections, we describe multiple methods for projecting the neural network score …
… In the next sections, we describe multiple methods for projecting the neural network score …
Convolutional neural network scoring and minimization in the D3R 2017 community challenge
… We assess the ability of our convolutional neural network (CNN)-based scoring functions
to perform several common tasks in the domain of drug discovery. These include correctly …
to perform several common tasks in the domain of drug discovery. These include correctly …
Training deep neural networks via direct loss minimization
… to arbitrary scoring functions, ie., non-linear and nonconvex functions. This allows us to
derive a new training algorithm for deep neural networks which directly minimizes the task loss. …
derive a new training algorithm for deep neural networks which directly minimizes the task loss. …
KDEEP: Protein–Ligand Absolute Binding Affinity Prediction via 3D-Convolutional Neural Networks
… of K DEEP makes it already an attractive scoring function for … scoring tasks, we hereby
propose an end-to-end framework, named K DEEP , based on 3D-convolutional neural networks …
propose an end-to-end framework, named K DEEP , based on 3D-convolutional neural networks …
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