High throughput sequencing for the detection and characterization of RNA viruses

AH Fitzpatrick, A Rupnik, H O'Shea, F Crispie… - Frontiers in …, 2021 - frontiersin.org
… and agnostic High Throughput Sequencing of RNA viruses in a variety of sample matrices.
HTS also referred to as deep sequencing, next generation sequencing and third generation …

Recent advances on detection and characterization of fruit tree viruses using high-throughput sequencing technologies

VI Maliogka, A Minafra, P Saldarelli, AB Ruiz-García… - Viruses, 2018 - mdpi.com
… , the wide application of high-throughput sequencing (HTS) … discovery, detection, and
characterization of fruit tree viruses and virus-like agents accomplished by HTS approaches. A high

High throughput sequencing for detection of foodborne pathogens

C Sekse, A Holst-Jensen, U Dobrindt… - Frontiers in …, 2017 - frontiersin.org
… of high throughput sequencing (HTS) technologies for detection and characterization of …
Research (upper left) is a knowledge driver providing exploitable reference data and detection

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing

P Peláez, MS Trejo, LP Iñiguez, G Estrada-Navarrete… - BMC genomics, 2012 - Springer
… based on small RNA high-throughput sequencing results. However, this analysis is usually
… to a genomic location and retrieval of adjoining sequence to help with secondary structure …

Rapid detection and identification of infectious pathogens based on high-throughput sequencing

PX Ni, X Ding, YX Zhang, X Yao, RX Sun… - Chinese Medical …, 2015 - mednexus.org
… to increase the awareness of unidentified pathogens by developing a method to investigate
hitherto unidentified infectious pathogens based on unbiased high-throughput sequencing. …

Genome-wide identification and characterization of circular RNAs by high throughput sequencing in soybean

W Zhao, Y Cheng, C Zhang, Q You, X Shen, W Guo… - Scientific reports, 2017 - nature.com
… tissues of soybean using high-throughput sequencing technology and bioinformatic …
circRNAs were identified and characterized. Besides that, the characteristics of circRNAs derived …

Enrichment post-library preparation enhances the sensitivity of high-throughput sequencing-based detection and characterization of viruses from complex samples

AC Paskey, KG Frey, G Schroth, S Gross, T Hamilton… - BMC genomics, 2019 - Springer
… viral detection via high-throughput sequencing. … high throughput sequencing for biosurveillance
and for infectious disease diagnostics. For both biosurveillance and clinical sequencing, …

Identification and Characterization of microRNAs from Peanut (Arachis hypogaea L.) by High-Throughput Sequencing

X Chi, Q Yang, X Chen, J Wang, L Pan, M Chen… - PloS one, 2011 - journals.plos.org
Sequence analysis of short RNAs We used high-throughput sequencing of small RNA
libraries to identify low-abundance candidate miRNAs in peanut. In all, 25,686,617 reads were …

High-throughput sequencing, characterization and detection of new and conserved cucumber miRNAs

G Martinez, J Forment, C Llave, V Pallas, G Gomez - PloS one, 2011 - journals.plos.org
… structure analysis revealed that pre-miRNAs holding characteristicsequence homology
(Table S1). This finding added robustness to our data obtained by high throughput sequencing. …

Identification and characterization of miRNA transcriptome in potato by high-throughput sequencing

R Zhang, D Marshall, GJ Bryan, C Hornyik - PLoS One, 2013 - journals.plos.org
… Here we used high-throughput sequencing and bioinformatics analysis to analyze miRNAs
in the tuber bearing crop potato (Solanum tuberosum). Small RNAs were analysed from leaf …