Twenty‐five pitfalls in the analysis of diffusion MRI data

DK Jones, M Cercignani - NMR in Biomedicine, 2010 - Wiley Online Library
… as a useful reference for those embarking on new diffusion MRI-based studies, and as a check
… The aim of this article, however, is not to suggest that diffusion MRI is unreliable or should …

Dipy, a library for the analysis of diffusion MRI data

E Garyfallidis, M Brett, B Amirbekian… - Frontiers in …, 2014 - frontiersin.org
Diffusion Imaging in Python (Dipy) is a free and open source software project for the … data
from diffusion magnetic resonance imaging (dMRI) experiments. dMRI is an application of MRI

Visualization of diffusion MRI data

A Leemans - Diffusion MRI, 2010 - books.google.com
… methods for diffusion tensor MRI (DT-MRI or DTI), … diffusion MRI data and provides informative
examples of both the conventional two-dimensional (2D) image maps of specific diffusion

Diffusion‐tensor MRI: theory, experimental design and data analysis–a technical review

PJ Basser, DK Jones - … : An International Journal Devoted to the …, 2002 - Wiley Online Library
… to the estimation of the effective diffusion tensor of water in tissue. It … We focus primarily upon
diffusion tensor MRI (DT-MRI) dataDiffusion MRI of Wallerian degeneration. A new tool to …

[HTML][HTML] Fixel-based analysis of diffusion MRI: methods, applications, challenges and opportunities

T Dhollander, A Clemente, M Singh, F Boonstra… - Neuroimage, 2021 - Elsevier
… to acquire in-vivo data sensitive to microstructural features of … link between the rich diffusion
MRI data and various metrics … the point where some diffusion MRI models can now provide …

TORTOISE: an integrated software package for processing of diffusion MRI data

C Pierpaoli, L Walker, MO Irfanoglu… - ISMRM 18th annual …, 2010 - nichd.nih.gov
… -processing of diffusion weighted images and robust processing of diffusion tensor data is
vital for … Here we present a comprehensive tool for diffusion MRI data correction, as well as for …

Multiple‐fiber reconstruction algorithms for diffusion MRI

DC Alexander - Annals of the New York Academy of Sciences, 2005 - Wiley Online Library
… on a standard clinical diffusion MRI data set originally acquired for diffusion-tensor … , PASMRI
and q-ball, on data from a whole-brain diffusion MRI acquisition sequence that is in routine …

[PDF][PDF] Camino: open-source diffusion-MRI reconstruction and processing

PA Cook, Y Bai, S Nedjati-Gilani… - … scientific meeting of …, 2006 - researchgate.net
… Introduction Diffusion-MRI is a rapidly evolving research field that has produced a wealth of
… for the diffusion MRI research community. Camino implements a data processing pipeline, …

Inter-site and inter-scanner diffusion MRI data harmonization

H Mirzaalian, L Ning, P Savadjiev, O Pasternak… - NeuroImage, 2016 - Elsevier
diffusion MRI data acquired from multiple sites and scanners, which is imperative for joint
analysis of the data … -dependent spatial variability of the diffusion signal in different parts of the …

Persistent angular structure: new insights from diffusion MRI data. Dummy version

KM Jansons, DC Alexander - Biennial International Conference on …, 2003 - Springer
data was acquired originally for DT-MRI using a clinical acquisition sequence. In section 2,
we provide some background on diffusion MRI … test PAS-MRI on synthetic data and then show …