A discovery resource of rare copy number variations in individuals with autism spectrum disorder

A Prasad, D Merico… - G3: Genes …, 2012 - academic.oup.com
… The identification of rare inherited and de novo copy number variations (CNVs) in human
subjects … Our objective was to discover new CNVs in ASD cases that were not detected by SNP …

High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications

TH Shaikh, X Gai, JC Perin, JT Glessner, H Xie… - Genome …, 2009 - genome.cshlp.org
We present a database of copy number variations (CNVs) detected in 2026 disease-free
individuals, using high-density, SNP-based oligonucleotide microarrays. This large cohort, …

Copy number variation: new insights in genome diversity

JL Freeman, GH Perry, L Feuk, R Redon… - Genome …, 2006 - genome.cshlp.org
DNA copy number variation has long been associated with specific chromosomal …
variation is still developing, it seems likely that, at least in humans, copy number variants (…

[HTML][HTML] CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics

X Gai, JC Perin, K Murphy, R O'Hara, M D'arcy… - BMC …, 2010 - Springer
… Recent studies have shown that copy number variations (CNVs) are frequent in higher
eukaryotes and associated with a substantial portion of inherited and acquired risk for various …

Accurate and reliable high-throughput detection of copy number variation in the human genome

H Fiegler, R Redon, D Andrews, C Scott… - Genome …, 2006 - genome.cshlp.org
clone DNA microarray covering the entire human genome in tiling path resolution that we have
used to identify copy number variation … identification of copy number variants (CNVs). The …

[HTML][HTML] Large-scale discovery of novel neurodevelopmental disorder-related genes through a unified analysis of single-nucleotide and copy number variants

K Hamanaka, N Miyake, T Mizuguchi, S Miyatake… - Genome Medicine, 2022 - Springer
… of theoretical mutation rates have identified a number of novel disease-causing genes [4]. …
for copy number variations (CNVs), another class of important disruptive genetic variation. …

Allele-specific copy-number discovery from whole-genome and whole-exome sequencing

WB Wang, W Wang, W Sun, JJ Crowley… - Nucleic acids …, 2015 - academic.oup.com
Copy-number variants (… copy number, we calculate the likelihood of the observed TReC
and the ASReC from the estimated expected TReC for each possible underlying copy number. …

Mapping copy number variation by population-scale genome sequencing

RE Mills, K Walter, C Stewart, RE Handsaker, K Chen… - Nature, 2011 - nature.com
… SVs (that is, copy number variants) based on whole genome DNA sequencing data from
185 human genomes, integrating evidence from complementary SV discovery approaches with …

Copy-number variation in control population cohorts

D Pinto, C Marshall, L Feuk… - Human molecular …, 2007 - academic.oup.com
… Here, we provide an example of how to discover new CNVs from existing genotype data
from large-scale genetic epidemiological studies. We also discuss the need to expand surveys …

[PDF][PDF] A comprehensive workflow for read depth-based identification of copy-number variation from whole-genome sequence data

B Trost, S Walker, Z Wang… - The American Journal of …, 2018 - cell.com
A remaining hurdle to whole-genome sequencing (WGS) becoming a first-tier genetic test
has been accurate detection of copy-number variations (CNVs). Here, we used several …