Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species
M Verbiest, M Maksimov, Y Jin… - Journal of …, 2023 - academic.oup.com
… Short tandem repeats are one of the richest sources of genotypic variation, but were long …
of neurodegenerative repeat expansion diseases such as Huntington's disease. However, we …
of neurodegenerative repeat expansion diseases such as Huntington's disease. However, we …
Sequence composition changes in short tandem repeats: heterogeneity, detection, mechanisms and clinical implications
… The disease penetrance is also influenced by the repeat length in … disease, in which alleles
that are a few repeat copies short of the full mutation are associated with reduced disease …
that are a few repeat copies short of the full mutation are associated with reduced disease …
Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences
T Gall-Duncan, N Sato, RKC Yuen… - Genome …, 2022 - genome.cshlp.org
… of new repeat disease motifs, the focus of … disease mutation discovery and our understanding
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease …
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease …
Patterns and mutational signatures of tandem base substitutions causing human inherited disease
… Remarkably, the most frequent TBS type in these three cancers is GC/GC>AA/TT, as we
observed in the inherited disease mutation dataset. In contrast to CC/GG>TT/AA and CC/GG>AA/…
observed in the inherited disease mutation dataset. In contrast to CC/GG>TT/AA and CC/GG>AA/…
[HTML][HTML] Disease-associated short tandem repeats co-localize with chromatin domain boundaries
… Although daSTRs exhibit tremendous diversity in sequence, gene body location, and mutation-…
locations in the genome with increased susceptibility to STR instability in human disease. …
locations in the genome with increased susceptibility to STR instability in human disease. …
Short tandem repeats and genetic variation
BE Madsen, P Villesen, C Wiuf - Genetic Variation: Methods and Protocols, 2010 - Springer
… and identification of probable targets for disease causing variants may be useful. … for disease
related mutations and may therefore be good candidates for resequencing studies. Tandem …
related mutations and may therefore be good candidates for resequencing studies. Tandem …
[HTML][HTML] The Genomic landscape of short tandem repeats across multiple ancestries
P Vijayaraghavan, S Batalov, Y Ding, E Sanford… - Plos one, 2023 - journals.plos.org
… De Novo STR mutations Short Tandem Repeats are a common etiology of de novo
disease-causing mutations in people [13]. By better characterizing these de novo STRs, new …
disease-causing mutations in people [13]. By better characterizing these de novo STRs, new …
[HTML][HTML] Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
… In addition to short tandem repeat diseases, repeat copy … disease-causing mutations in
tandem repeat regions which have been overlooked by short read sequencing in human disease. …
tandem repeat regions which have been overlooked by short read sequencing in human disease. …
[HTML][HTML] Diagnostics of short tandem repeat expansion variants using massively parallel sequencing and componential tools
RH de Leeuw, D Garnier, RMJM Kroon… - European Journal of …, 2019 - nature.com
… and rarely directly related to inherited diseases [1]. However, some STRs, especially
those where a single repeat unit encodes for an amino acid, are disease associated. A well-known …
those where a single repeat unit encodes for an amino acid, are disease associated. A well-known …
[HTML][HTML] Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions
IS Rajan-Babu, JJ Peng, R Chiu… - Genome medicine, 2021 - Springer
… , FXN, or DMPK disease STR locus, or the spinocerebellar ataxia disease STR panel, our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …