Mutation and selection processes regulating short tandem repeats give rise to genetic and phenotypic diversity across species

M Verbiest, M Maksimov, Y Jin… - Journal of …, 2023 - academic.oup.com
Short tandem repeats are one of the richest sources of genotypic variation, but were long …
of neurodegenerative repeat expansion diseases such as Huntington's disease. However, we …

Sequence composition changes in short tandem repeats: heterogeneity, detection, mechanisms and clinical implications

IS Rajan-Babu, E Dolzhenko, MA Eberle… - Nature Reviews …, 2024 - nature.com
… The disease penetrance is also influenced by the repeat length in … disease, in which alleles
that are a few repeat copies short of the full mutation are associated with reduced disease

Advancing genomic technologies and clinical awareness accelerates discovery of disease-associated tandem repeat sequences

T Gall-Duncan, N Sato, RKC Yuen… - Genome …, 2022 - genome.cshlp.org
… of new repeat disease motifs, the focus of … disease mutation discovery and our understanding
of pathogenic mechanisms. We begin with a brief overview of the history of repeat disease

Patterns and mutational signatures of tandem base substitutions causing human inherited disease

JM Chen, C Férec, DN Cooper - Human mutation, 2013 - Wiley Online Library
… Remarkably, the most frequent TBS type in these three cancers is GC/GC>AA/TT, as we
observed in the inherited disease mutation dataset. In contrast to CC/GG>TT/AA and CC/GG>AA/…

[HTML][HTML] Disease-associated short tandem repeats co-localize with chromatin domain boundaries

JH Sun, L Zhou, DJ Emerson, SA Phyo, KR Titus… - Cell, 2018 - cell.com
… Although daSTRs exhibit tremendous diversity in sequence, gene body location, and mutation-…
locations in the genome with increased susceptibility to STR instability in human disease. …

Short tandem repeats and genetic variation

BE Madsen, P Villesen, C Wiuf - Genetic Variation: Methods and Protocols, 2010 - Springer
… and identification of probable targets for disease causing variants may be useful. … for disease
related mutations and may therefore be good candidates for resequencing studies. Tandem

[HTML][HTML] The Genomic landscape of short tandem repeats across multiple ancestries

P Vijayaraghavan, S Batalov, Y Ding, E Sanford… - Plos one, 2023 - journals.plos.org
… De Novo STR mutations Short Tandem Repeats are a common etiology of de novo
disease-causing mutations in people [13]. By better characterizing these de novo STRs, new …

[HTML][HTML] Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads

S Mitsuhashi, MC Frith, T Mizuguchi, S Miyatake… - Genome biology, 2019 - Springer
… In addition to short tandem repeat diseases, repeat copy … disease-causing mutations in
tandem repeat regions which have been overlooked by short read sequencing in human disease. …

[HTML][HTML] Diagnostics of short tandem repeat expansion variants using massively parallel sequencing and componential tools

RH de Leeuw, D Garnier, RMJM Kroon… - European Journal of …, 2019 - nature.com
… and rarely directly related to inherited diseases [1]. However, some STRs, especially
those where a single repeat unit encodes for an amino acid, are disease associated. A well-known …

[HTML][HTML] Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions

IS Rajan-Babu, JJ Peng, R Chiu… - Genome medicine, 2021 - Springer
… , FXN, or DMPK disease STR locus, or the spinocerebellar ataxia disease STR panel, our …
We performed clinical PCR tests on seven (out of 10) full-mutation samples identified by our …