STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data

A Halman, E Dolzhenko, A Oshlack - Human Mutation, 2022 - Wiley Online Library
short tandem repeats (STRs) have been implicated as the causal variant in over 50 diseases
… However, running these tools out of the box only allows around half of the known disease-…

Sequencing and characterizing short tandem repeats in the human genome

HA Tanudisastro, IW Deveson, H Dashnow… - Nature Reviews …, 2024 - nature.com
… STR loci helps to understand biology and disease and could contribute to the discovery of …
of diseases such as FXS and spinal-bulbar muscular atrophy, which are caused by mutations

Instability of short tandem repeats (microsatellites) in human cancers

R Wooster, AM Cleton-Jansen, N Collins, J Mangion… - Nature …, 1994 - nature.com
… ) gene gives rise to Kennedy's disease. We recently reported that mutations in the AR gene
can … Analysis of short tandem repeats Twelve short tandem repeats were amplified from 196 …

Tandem repeats mediating genetic plasticity in health and disease

AJ Hannan - Nature Reviews Genetics, 2018 - nature.com
… more liable to mutation; this … of tandem repeats, particularly of short tandem repeats, can
cause a range of disorders (including Huntington disease, various ataxias, motor neuron disease

[PDF][PDF] … Novel Method for Identifying Length Variations of Short Tandem Repeats Based on Next Generation Sequencing and Its Application in Human Genetic Disease …

Z YAN, Y WANG, K LIU, S XIANG… - Progress in Biochemistry …, 2016 - researchgate.net
… variations of short tandem repeats (STRs). Many genetic diseases are known to be caused
by expansions of STRs, especially neurological disorders, such as Huntington's disease. …

Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing

K Doi, T Monjo, PH Hoang, J Yoshimura… - …, 2014 - academic.oup.com
… in numerous short reads because known STRs associated with diseases are frequently …
We first identify ‘exact’ STRs with no mutations in each short read using an efficient O(n log n…

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

A Fungtammasan, G Ananda, SE Hile, MSW Su… - Genome …, 2015 - genome.cshlp.org
Short tandem repeats (STRs) are implicated in dozens of human genetic diseases and …
with the number of mutations expected based on our estimated mutation rates by repeat number …

Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data

RM Tankard, MF Bennett, P Degorski… - The American Journal of …, 2018 - cell.com
… We developed exSTRa (expanded short tandem repeat algorithm), a method that uses …
We assessed results by comparing the findings to known disease status. Performance was also …

Short tandem repeat expansions in sporadic amyotrophic lateral sclerosis and frontotemporal dementia

L Henden, LG Fearnley, N Grima, EP McCann… - Science …, 2023 - science.org
… Pathogenic short tandem repeat (STR) expansions cause over 20 neurodegenerative diseases.
To … The genetic etiologies of ALS and FTD are complex, with disease-linked mutations

Sequencing technologies and tools for short tandem repeat variation detection

MD Cao, S Balasubramanian… - Briefings in …, 2015 - academic.oup.com
… of which cause neurodegenerative disease in humans. With … short tandem repeat variation
can be detected. We further note that to detect variation relevant to many repeat diseases, it is …