STRipy: A graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data
A Halman, E Dolzhenko, A Oshlack - Human Mutation, 2022 - Wiley Online Library
… short tandem repeats (STRs) have been implicated as the causal variant in over 50 diseases
… However, running these tools out of the box only allows around half of the known disease-…
… However, running these tools out of the box only allows around half of the known disease-…
Sequencing and characterizing short tandem repeats in the human genome
HA Tanudisastro, IW Deveson, H Dashnow… - Nature Reviews …, 2024 - nature.com
… STR loci helps to understand biology and disease and could contribute to the discovery of …
of diseases such as FXS and spinal-bulbar muscular atrophy, which are caused by mutations …
of diseases such as FXS and spinal-bulbar muscular atrophy, which are caused by mutations …
Instability of short tandem repeats (microsatellites) in human cancers
R Wooster, AM Cleton-Jansen, N Collins, J Mangion… - Nature …, 1994 - nature.com
… ) gene gives rise to Kennedy's disease. We recently reported that mutations in the AR gene
can … Analysis of short tandem repeats Twelve short tandem repeats were amplified from 196 …
can … Analysis of short tandem repeats Twelve short tandem repeats were amplified from 196 …
Tandem repeats mediating genetic plasticity in health and disease
AJ Hannan - Nature Reviews Genetics, 2018 - nature.com
… more liable to mutation; this … of tandem repeats, particularly of short tandem repeats, can
cause a range of disorders (including Huntington disease, various ataxias, motor neuron disease…
cause a range of disorders (including Huntington disease, various ataxias, motor neuron disease…
[PDF][PDF] … Novel Method for Identifying Length Variations of Short Tandem Repeats Based on Next Generation Sequencing and Its Application in Human Genetic Disease …
… variations of short tandem repeats (STRs). Many genetic diseases are known to be caused
by expansions of STRs, especially neurological disorders, such as Huntington's disease. …
by expansions of STRs, especially neurological disorders, such as Huntington's disease. …
Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing
… in numerous short reads because known STRs associated with diseases are frequently …
We first identify ‘exact’ STRs with no mutations in each short read using an efficient O(n log n…
We first identify ‘exact’ STRs with no mutations in each short read using an efficient O(n log n…
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
… Short tandem repeats (STRs) are implicated in dozens of human genetic diseases and …
with the number of mutations expected based on our estimated mutation rates by repeat number …
with the number of mutations expected based on our estimated mutation rates by repeat number …
Detecting expansions of tandem repeats in cohorts sequenced with short-read sequencing data
RM Tankard, MF Bennett, P Degorski… - The American Journal of …, 2018 - cell.com
… We developed exSTRa (expanded short tandem repeat algorithm), a method that uses …
We assessed results by comparing the findings to known disease status. Performance was also …
We assessed results by comparing the findings to known disease status. Performance was also …
Short tandem repeat expansions in sporadic amyotrophic lateral sclerosis and frontotemporal dementia
… Pathogenic short tandem repeat (STR) expansions cause over 20 neurodegenerative diseases.
To … The genetic etiologies of ALS and FTD are complex, with disease-linked mutations …
To … The genetic etiologies of ALS and FTD are complex, with disease-linked mutations …
Sequencing technologies and tools for short tandem repeat variation detection
MD Cao, S Balasubramanian… - Briefings in …, 2015 - academic.oup.com
… of which cause neurodegenerative disease in humans. With … short tandem repeat variation
can be detected. We further note that to detect variation relevant to many repeat diseases, it is …
can be detected. We further note that to detect variation relevant to many repeat diseases, it is …