Indica rice genome assembly, annotation and mining of blast disease resistance genes

HB Mahesh, MD Shirke, S Singh, A Rajamani… - BMC genomics, 2016 - Springer
… Here we report the de novo genome assembly and annotation … disease [5], caused by
Magnaporthe oryzae. Rice blast is a serious constraint in rice production and utilization of resistant

A high‐quality genome assembly of the eggplant provides insights into the molecular basis of disease resistance and chlorogenic acid synthesis

D Li, J Qian, W Li, N Yu, G Gan, Y Jiang… - Molecular Ecology …, 2021 - Wiley Online Library
… We comprehensively characterized genes involved in disease resistance, CGA synthesis, …
genome sequence. We also conducted comparative analysis of the eggplant genome with …

Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing

AC Read, MJ Moscou, AV Zimin, G Pertea… - PLoS …, 2020 - journals.plos.org
… The genome assembly also identified a resistance gene for a fungal … Using the assembly
we sought to delineate NLR gene content with a focus on a disease resistance locus, Xo1, …

A chromosome-scale genome assembly of Dasypyrum villosum provides insights into its application as a broad-spectrum disease resistance resource for wheat …

X Zhang, H Wang, H Sun, Y Li, Y Feng, C Jiao, M Li… - Molecular Plant, 2023 - cell.com
Dasypyrum villosum is one of the most valuable gene resources in wheat improvement,
especially for disease resistance. The mining of favorable genes from D. villosum is frustrated by …

Haplotype resolved chromosome level genome assembly of Citrus australis reveals disease resistance and other citrus specific genes

U Nakandala, AK Masouleh, MW Smith… - Horticulture …, 2023 - academic.oup.com
… haplotype resolved genome assembly and annotation of genes of C. australis which will be
a valuable resource for citrus improvement through genomic-assisted breeding approaches. …

Chromosome-scale genome assembly of Prunus pusilliflora provides novel insights into genome evolution, disease resistance, and dormancy release in Cerasus L.

S Jiu, B Chen, X Dong, Z Lv, Y Wang, C Yin… - Horticulture …, 2023 - academic.oup.com
resistance to disease resistance between Ppus and Pavi, we conducted a genome-wide
analysis of resistance … Using a pipeline for the genome-wide prediction of RGAs [35], we …

Chromosome-level genome assembly of Mentha longifolia L. reveals gene organization underlying disease resistance and essential oil traits

KJ Vining, I Pandelova, I Lange, AN Parrish, A Lefors… - G3, 2022 - academic.oup.com
… and genomic research to aid breeding efforts that target Verticillium wilt disease resistance
and … Here, we present a near-complete, chromosome-scale mint genome assembly for M. …

Hybrid Genome Assembly of a Major Quantitative Disease Resistance Locus in Soybean Toward Fusarium graminearum

CR Million, S Wijeratne, BJ Cassone, S Lee… - … Plant Genome, 2019 - Wiley Online Library
… region on chromosome 8 would confer resistance to F. graminearum. … genome assembly
were used to dissect and characterize the genes involved in quantitative disease resistance to F…

Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning

N Athiyannan, M Abrouk, WHP Boshoff, S Cauet… - Nature …, 2022 - nature.com
… To facilitate the cloning of the remaining stripe rust resistance genes from Kariega, we
generated a de novo genome assembly. First, we generated PacBio CCS (HiFi) reads …

A high‐quality Brassica napus genome reveals expansion of transposable elements, subgenome evolution and disease resistance

X Chen, C Tong, X Zhang, A Song, M Hu… - Plant Biotechnology …, 2021 - Wiley Online Library
… Here, we report a high-quality genome assembly of a typical semi-winter rapeseed cultivar,
'Zhongshuang11' (hereafter 'ZS11'), using a combination of single-molecule sequencing and …