[HTML][HTML] Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of angiosperms
… high-throughput sequencing. In this study on herbariomics, we used this targeted sequencing
… 204 years old and span the breadth of angiosperm diversity. We show that on average 207 …
… 204 years old and span the breadth of angiosperm diversity. We show that on average 207 …
[HTML][HTML] Tackling rapid radiations with targeted sequencing
… it adequately covers the range of morphological diversity observed in the C4 Cyperus clade,
… We show the utility of two targeted sequencing kits, the universal Angiosperms-353 kit and a …
… We show the utility of two targeted sequencing kits, the universal Angiosperms-353 kit and a …
A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
… We used multiple sequence alignments from over 600 angiosperms for 353 putatively single…
angiosperm diversity. We find high rates of recovery for both the targeted coding sequences …
angiosperm diversity. We find high rates of recovery for both the targeted coding sequences …
A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes
… 200–300-bp inserts, resulting in tails of decreasing sequence depth ∼200–300 bp …
sequencing in eudicots and monocots (which collectively represent >95% of angiosperm diversity), …
sequencing in eudicots and monocots (which collectively represent >95% of angiosperm diversity), …
Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study
… that targeted sequence capture is feasible for resolving rapid, recent angiosperm radiations,
… containing nuclear exons and flanking sequences have higher phylogenetic utility and …
… containing nuclear exons and flanking sequences have higher phylogenetic utility and …
[HTML][HTML] Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics
… refinement of the probes and choice of target sequences to better represent the diversity of
angiosperms and maximize the length of sequences recovered across a broader set of taxa, …
angiosperms and maximize the length of sequences recovered across a broader set of taxa, …
Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations
… , a large and ecologically diverse plant family with highly … designed to target 353 single-copy
genes across angiosperms. … , a new bait set for targeted sequencing, designed to address a …
genes across angiosperms. … , a new bait set for targeted sequencing, designed to address a …
New targets acquired: Improving locus recovery from the Angiosperms353 probe set
… default353’ target file). To obtain a phylogenetically diverse set of angiosperm sequences
from … can be used to incorporate additional target sequences from any available transcriptome, …
from … can be used to incorporate additional target sequences from any available transcriptome, …
[HTML][HTML] Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
… the Angiosperms-… diverse subtribes, the number of phylogenetically informative
characters increased up to ten fold when we supplemented the targeted sequences with non-targeted …
characters increased up to ten fold when we supplemented the targeted sequences with non-targeted …
[HTML][HTML] Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes
TLP Couvreur, AJ Helmstetter, EJM Koenen… - Frontiers in plant …, 2019 - frontiersin.org
… of five species from two of the most diverse Annonaceae subfamilies (Annonoideae and …
are recovering in off-target sequences. Recovery of off-target sequence data is an important …
are recovering in off-target sequences. Recovery of off-target sequence data is an important …
相关搜索
- targeted sequence capture
- nuclear genes targeted sequencing
- rapid radiations targeted sequencing
- pantropical ochnaceae targeted sequencing
- angiosperm plastid genomes targeted enrichment strategy
- long read sequencing targeted capture
- herbarium specimens diversity of angiosperms
- universal probe targeted sequencing
- flowering plant targeted sequencing
- comparative phylogenomics targeted sequencing
- massively parallel sequencing targeted enrichment strategy
- angiosperm radiations sequence capture