[HTML][HTML] Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of angiosperms

GE Brewer, JJ Clarkson, O Maurin, AR Zuntini… - Frontiers in plant …, 2019 - frontiersin.org
… high-throughput sequencing. In this study on herbariomics, we used this targeted sequencing
… 204 years old and span the breadth of angiosperm diversity. We show that on average 207 …

[HTML][HTML] Tackling rapid radiations with targeted sequencing

I Larridon, T Villaverde, AR Zuntini, L Pokorny… - Frontiers in plant …, 2020 - frontiersin.org
… it adequately covers the range of morphological diversity observed in the C4 Cyperus clade,
… We show the utility of two targeted sequencing kits, the universal Angiosperms-353 kit and a …

A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering

MG Johnson, L Pokorny, S Dodsworth… - Systematic …, 2019 - academic.oup.com
… We used multiple sequence alignments from over 600 angiosperms for 353 putatively single…
angiosperm diversity. We find high rates of recovery for both the targeted coding sequences

A targeted enrichment strategy for massively parallel sequencing of angiosperm plastid genomes

GW Stull, MJ Moore, VS Mandala… - Applications in Plant …, 2013 - Wiley Online Library
… 200–300-bp inserts, resulting in tails of decreasing sequence depth ∼200–300 bp …
sequencing in eudicots and monocots (which collectively represent >95% of angiosperm diversity), …

Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study

JC Bagley, S Uribe-Convers, MM Carlsen… - Molecular phylogenetics …, 2020 - Elsevier
… that targeted sequence capture is feasible for resolving rapid, recent angiosperm radiations,
… containing nuclear exons and flanking sequences have higher phylogenetic utility and …

[HTML][HTML] Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics

AJ McDonnell, WJ Baker, S Dodsworth… - Applications in Plant …, 2021 - ncbi.nlm.nih.gov
… refinement of the probes and choice of target sequences to better represent the diversity of
angiosperms and maximize the length of sequences recovered across a broader set of taxa, …

Taxon‐specific or universal? Using target capture to study the evolutionary history of rapid radiations

G Yardeni, J Viruel, M Paris, J Hess… - Molecular Ecology …, 2022 - Wiley Online Library
… , a large and ecologically diverse plant family with highly … designed to target 353 single-copy
genes across angiosperms. … , a new bait set for targeted sequencing, designed to address a …

New targets acquired: Improving locus recovery from the Angiosperms353 probe set

TGB McLay, JL Birch, BF Gunn, W Ning… - Applications in plant …, 2021 - Wiley Online Library
… default353’ target file). To obtain a phylogenetically diverse set of angiosperm sequences
from … can be used to incorporate additional target sequences from any available transcriptome, …

[HTML][HTML] Phylogenomics of Gesneriaceae using targeted capture of nuclear genes

E Ogutcen, C Christe, K Nishii, N Salamin… - Molecular Phylogenetics …, 2021 - Elsevier
… the Angiosperms-… diverse subtribes, the number of phylogenetically informative
characters increased up to ten fold when we supplemented the targeted sequences with non-targeted

[HTML][HTML] Phylogenomics of the major tropical plant family Annonaceae using targeted enrichment of nuclear genes

TLP Couvreur, AJ Helmstetter, EJM Koenen… - Frontiers in plant …, 2019 - frontiersin.org
… of five species from two of the most diverse Annonaceae subfamilies (Annonoideae and …
are recovering in off-target sequences. Recovery of off-target sequence data is an important …