Non-coding RNAs in the interaction between rice and Meloidogyne graminicola

B Verstraeten, MR Atighi, V Ruiz-Ferrer, C Escobar… - BMC genomics, 2021 - Springer
… in DNA methylation. The results in this work are a first step in the characterization of non-coding
RNA … primarily transcription factors known to be involved in plant stress responses. Small …

[HTML][HTML] Non-coding RNAs as regulators in epigenetics

JW Wei, K Huang, C Yang… - Oncology reports, 2017 - spandidos-publications.com
… , the non-coding RNAs (3). DNA methylation is defined as the selective methylation (addition …
the existence of miRNA-mediated DNA methylation changes in plants (49,50). Other recent …

Differential expression networks and inheritance patterns of long noncoding RNA s in castor bean seeds

W Xu, T Yang, B Wang, B Han, H Zhou… - The Plant …, 2018 - Wiley Online Library
… In this study, we obtained strand-specific RNA sequencing (ssRNA-seq) and DNA methylation
data, and comprehensively characterized the genomic expression, DNA methylation and …

The epigenetics of non-coding RNA

LJ Collins, B Schönfeld, XS Chen - Handbook of epigenetics, 2011 - Elsevier
… In plants, siRNAs are involved in RNA-directed DNA Methylation (RdDM), which was first …
(LTR) retrotransposons, along with DNA methylation during embryogenesis in male germ cells (…

Long non-coding RNAs: Rising regulators of plant reproductive development

T Yu, H Zhu - Agronomy, 2019 - mdpi.com
… promoter transcription can induce RNA-directed DNA methylation in the LDMAR promoter
… Subsequently, LDMAR can be repressed through an RNA-dependent DNA methylation (…

Biogenesis, functions, interactions, and resources of non-coding RNAs in plants

H Chao, Y Hu, L Zhao, S Xin, Q Ni, P Zhang… - International Journal of …, 2022 - mdpi.com
RNA Pol V-mediated de novo DNA methylation of TAS genes [54]. In Arabidopsis, miR173
targets TAS1 and TAS2 genes to generate ta-siRNAs [55,57]. The TAS1 ta-siRNAs target the …

Dynamics of DNA methylation and its functions in plant growth and development

S Kumar, T Mohapatra - Frontiers in Plant Science, 2021 - frontiersin.org
… of DNA base methylation depends mainly on the activities of the writer/eraser guided by
non-coding RNA (… De novo DNA methylation and active demethylation activities control the …

Non-canonical RNA-directed DNA methylation

D Cuerda-Gil, RK Slotkin - Nature plants, 2016 - nature.com
… RdDM mechanism, as plant Pol IV and Pol V … DNA methylation in plant genomes, provided
plant biologists with a competitive edge to dissect and functionally characterize small RNA

Molecular functions of long non-coding RNAs in plants

QH Zhu, MB Wang - Genes, 2012 - mdpi.com
… -directed gene silencing pathways; functions of RNA polymerase V-dependent lncRNAs
involved in RNA-directed DNA methylation and precursor transcripts of trans-acting siRNAs (…

Emerging roles of RNA processing factors in regulating long non-coding RNAs

H Zhang, JK Zhu - RNA biology, 2014 - Taylor & Francis
non-coding RNAs (lncRNAs) can be important regulators of various biological processes such
as RNA-directed DNA methylation … Citation 23 AtRRP6L1 is a plant homolog of yeast Rrp6…