A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers

H Zhi, S Ning, X Li, Y Li, W Wu, X Li - Nucleic acids research, 2014 - academic.oup.com
… (DNA) methylation patterns of lincRNAs in cancers remains limited. In this study, we constructed
DNA methylation … cancer by reannotating data of DNA methylation arrays. We found that …

[HTML][HTML] Deciphering shared attributes of plant long non-coding RNAs through a comparative computational approach

VK Yadav, SK Jalmi, S Tiwari, S Kerkar - Scientific Reports, 2023 - nature.com
… , epigenetic state 33 is enriched for DNA methylation, H3K9me2, and showed accessibility
… These regions were enriched for DNA methylation, H3K9me2, and MNase. Interestingly, the …

Long nonprotein-coding RNAs in plants

V Jouannet, M Crespi - Long Non-Coding RNAs, 2011 - Springer
… Small RNAs include an expanding number of 20–40 nt RNAs that function in the regulation
… to DNA methylation and gene silencing. They generally involve double-stranded RNA or …

LncRNAs: genetic and epigenetic effects in plants

E Karlik, S Ari, N Gozukirmizi - Biotechnology & Biotechnological …, 2019 - Taylor & Francis
… Long non-coding RNAs (lncRNAs) transcribed from the eukaryotic genome play important
… Recent findings indicate that RdDM is a plant-specific de novo DNA methylation mechanism …

MicroRNAs and other Non-coding RNAs in Plant Epigenetics

A Manzoor, T Ashraf, H Shah, R Maqbool… - Plant MicroRNAs and …, 2023 - taylorfrancis.com
… and evolutionary histories of plants. This chapter highlights various aspects of non-coding
Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in …

Biogenesis of Non-coding RNAs (ncRNAs) and Their Biological Role in Rice (Oryza sativa L.)

I Khan, S Khan, M Akhoundian, D Shah… - Plant Molecular Biology …, 2023 - Springer
… transcriptional level through DNA methylation and repressive modification … plant genome
and is the key regulator of transcription via interactions with both coding and non-coding RNA

[HTML][HTML] Dietary non-coding RNAs from plants: Fairy tale or treasure?

GM Sundaram - Non-coding RNA Research, 2019 - Elsevier
… A broad classification of ncRNAs based on size can divide them into long non-coding
RNAs (>200 nts) and small non-coding RNAs (<200 nts). The long non-coding RNAs (lncRNAs) …

Indole-3-acetic acid has long-term effects on long non-coding RNA gene methylation and growth in Populus tomentosa

D Ci, M Tian, Y Song, Q Du, M Quan, A Xuan… - Molecular Genetics and …, 2019 - Springer
DNA methylation and long non-coding RNAs (lncRNAs) regulate plant growth and
development, but their relationship and effect on responses to the auxin phytohormone indole-3-…

PNRD: a plant non-coding RNA database

X Yi, Z Zhang, Y Ling, W Xu, Z Su - Nucleic acids research, 2015 - academic.oup.com
… For another example, the mechanism of interaction between lncRNA and siRNA in targeting
DNA methylation differs between plants and mammals (11). The fact is that more plant-…

MicroRNA-mediated DNA methylation in plants

X Jia, J Yan, G Tang - Frontiers in Biology, 2011 - Springer
… short non-coding RNAs are involved extensively in plants to … , and removal of DNA cytosine
methylation throughout their … DNA methylation although the role of small interfering RNAs (…