[HTML][HTML] DNA damage-induced transcription of transposable elements and long non-coding RNAs in Arabidopsis is rare and ATM-dependent

Z Wang, R Schwacke, R Kunze - Molecular plant, 2016 - cell.com
… long non-coding RNAs (lncRNAs), many of which are also upregulated by stress. Yet, it is
unknown whether DNA … mutated (atm) mutant plants 3 h after induction of DNA damage. In WT, …

Non-coding RNAs as potent tools for crop improvement

R Liu, JK Zhu - National Science Review, 2014 - academic.oup.com
RNAs (siRNAs) [1] more than 10 years ago, significant progress has been made in understanding
plant non-coding RNAs (… roles of small RNAs in RNA-directed DNA methylation, viral …

[HTML][HTML] Dicer-independent RNA-directed DNA methylation in Arabidopsis

DL Yang, G Zhang, K Tang, J Li, L Yang, H Huang… - Cell research, 2016 - nature.com
plants is largely guided by a previously unappreciated class of Dicer-independent non-coding
RNAs, and that siRNAs are required to maintain DNA methylation at only a subset of loci. …

[HTML][HTML] The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci

R Yang, Z Zheng, Q Chen, L Yang, H Huang, D Miki… - Genome Biology, 2017 - Springer
… Here, we describe an unexpected role in non-coding RNA-directed DNA methylation in …
Plant DNA methylation occurs in three different sequence contexts: CG, CHG, and CHH (H …

[HTML][HTML] Present scenario of long non-coding RNAs in plants

G Bhatia, N Goyal, S Sharma, SK Upadhyay, K Singh - Non-coding RNA, 2017 - mdpi.com
plant-specific RNA polymerase V are involved in the process of RNA-directed DNA methylation
(… In the model plant Arabidopsis thaliana, such class of lncRNAs is anticipated to act as a …

Role of long non-coding RNA in plant responses to abiotic stresses

J Li, H He, Y Li, A Wang, LF He - Acta Physiologiae Plantarum, 2022 - Springer
… to exert cellular effects through the interaction with DNA, RNA, or protein. LncRNA can …
PolIV and PolV can induce DNA methylation directed by RNA, thus reducing the expression …

Non-coding RNA directed DNA demethylation of Sphk1 CpG island

T Imamura, S Yamamoto, J Ohgane, N Hattori… - Biochemical and …, 2004 - Elsevier
… The Sphk1 CpG island is a target for tissue-dependent DNA methylation as … a non-coding
RNA could induce DNA demethylation at the T-DMR. In plants, expression of non-coding RNA

[HTML][HTML] Genome-wide identification and characterization of DNA methylation and long non-coding RNA expression in gastric cancer

P Song, L Wu, W Guan - Frontiers in genetics, 2020 - frontiersin.org
… on the DNA methylation patterns of genes encoding long noncoding RNAs (lncRNAs) in
gastric cancer (GC). This study comprehensively determined DNA methylation and lncRNA …

DNA methylation: from model plants to vegetable crops

WF Nie - Biochemical Society Transactions, 2021 - portlandpress.com
non-coding RNAs. Among these modifications, … DNA demethylation in Arabidopsis thaliana.
Secondly, this review will summarize the recent progress on the function of DNA methylation

[PDF][PDF] Noncoding rna-mediated chromatin silencing (RmCS) in plants

Y He - Mol Biol, 2013 - scholar.archive.org
… only DNA methylation, but also repressive histone modifications. In addition to siRNAs,
long non-coding RNAs (… hereafter as to non-coding RNA-mediated Chromatin Silencing (RmCS). …