Statistical and integrative system-level analysis of DNA methylation data

AE Teschendorff, CL Relton - Nature Reviews Genetics, 2018 - nature.com
… Currently, DNA methylation is the only epigenetic mark that can be … from DNA methylation
data, including cell-type heterogeneity, feature selection, reverse causation and system-level

Predicting DNA methylation level across human tissues

B Ma, EH Wilker, SAG Willis-Owen… - Nucleic acids …, 2014 - academic.oup.com
… (6) showed that leukocyte DNA methylation levels … DNA methylation analyses even when
the amount of blood that can be collected is limited. In the next stage, we examined methylation

DNA methylation as a marker for the past and future

T Ushijima, T Nakajima, T Maekita - Journal of gastroenterology, 2006 - Springer
… the induction of DNA methylation, we collected gastric mucosae from 154 healthy volunteers
with or without HP infection.The methylation level, the fraction of DNA molecules methylated …

Global DNA methylation level in whole blood as a biomarker in head and neck squamous cell carcinoma

D Ting Hsiung, CJ Marsit, EA Houseman, K Eddy… - … Biomarkers & Prevention, 2007 - AACR
… In this analysis, the LRE1 relative methylation level was broken into terciles based on the …
To examine those factors that may be etiologically related to LRE1 relative methylation level, …

DNA methylation methods: Global DNA methylation and methylomic analyses

S Li, TO Tollefsbol - Methods, 2021 - Elsevier
… on a genome-scale level. In this review, we discuss the different DNA methylation analysis
technologies primarily based on the initial treatments of DNA samples: bisulfite conversion, …

Sperm global DNA methylation level: association with semen parameters and genome integrity

D Montjean, A Zini, C Ravel, S Belloc, A Dalleac… - …, 2015 - Wiley Online Library
… global DNA methylation level with sperm parameters it would have been of particular interest
to connect global methylation level with male fertility data as global DNA methylation has …

Analysis of DNA methylation in different maize tissues

Y Lu, T Rong, M Cao - Journal of Genetics and Genomics, 2008 - Elsevier
… difference in the DNA methylation level exists among various … DNA methylation may also
function in tissue or organ differentiation and formation. Methods for detecting DNA methylation

Epigenetic inheritance and variation of DNA methylation level and pattern in maize intra-specific hybrids

X Zhao, Y Chai, B Liu - Plant science, 2007 - Elsevier
… refer to the total methylation state as relative methylation level denoting only two fore-mentioned
methylation states: full-methylation of internal Cs and hemi-methylation of external Cs at …

Low-level processing of Illumina Infinium DNA methylation beadarrays

TJ Triche Jr, DJ Weisenberger… - Nucleic acids …, 2013 - academic.oup.com
DNA methylation level is estimated by the ratio of DNA methylation intensity over the total,
M/… We evaluate the use of convolution models for background correction of DNA methylation

MethDB—a public database for DNA methylation data

C Grunau, E Renault, A Rosenthal… - Nucleic acids …, 2001 - academic.oup.com
… In particular, the discovery of changes in the methylation level during cancer development
has increased the interest in this field. In the past, a vast amount of data has been generated …