Population-based 3D genome structure analysis reveals driving forces in spatial genome organization

H Tjong, W Li, R Kalhor, C Dai, S Hao… - Proceedings of the …, 2016 - National Acad Sciences
gene distances is a good indication of the predictive value of our models. Next, we focus our
analysis on the role of centromeres in shaping the spatial genome organizationdriving force

tRNAs as a driving force of genome evolution in yeast

AR Guimarães, I Correia, I Sousa, C Oliveira… - Frontiers in …, 2021 - frontiersin.org
… Whether individual tDNA associations play a role in genome organization is still … organization
of the genome, this review also describes how changes in the tRNA pool can drive genome

Forces driving the three‐dimensional folding of eukaryotic genomes

A Rada‐Iglesias, FG Grosveld… - Molecular systems …, 2018 - embopress.org
forces that contribute to the spatial organization of genomes, … universal blocks of genome
organization, the preponderant … is not only a driving force of genomic reorganization, but also …

[HTML][HTML] Entropy-driven genome organization

D Marenduzzo, C Micheletti, PR Cook - Biophysical journal, 2006 - cell.com
… DNA and RNA polymerases active on bacterial and human genomes in the crowded … entropic
forces between engaged polymerases to drive the self-organization of genomes into loops …

Transcription factors and 3D genome conformation in cell-fate decisions

R Stadhouders, GJ Filion, T Graf - Nature, 2019 - nature.com
… transcription and genome conformation is a driving force for cell-fate decisions. … genomic
regions 27 has resulted in the discovery of several principles of 3D genome organization. Such …

Organizational principles of 3D genome architecture

MJ Rowley, VG Corces - Nature Reviews Genetics, 2018 - nature.com
… a unifying view of 3D genome organization, suggesting that transcription … in which 3D
chromatin organization determines gene expression, we … Interplay of 3D organizational drivers

Economy, speed and size matter: evolutionary forces driving nuclear genome miniaturization and expansion

T Cavalier-Smith - Annals of botany, 2005 - academic.oup.com
genomes by gene loss and eliminating virtually all secondary DNA. The primary driving forces
for genome … yielded genomes as tiny as 0·38 Mb (making the nuclear genome size range …

Physicochemical foundations of life that direct evolution: chance and natural selection are not evolutionary driving forces

D Auboeuf - Life, 2020 - mdpi.com
… that regulation of gene transcription is based on the three-dimensional (3D) genome organization,
… in various genomic locations could facilitate 3D genome organization and promote co-…

Evolution of cell populations in vitro: peculiarities, driving forces, mechanisms and consequences

VA Kunakh - Biopolymers and cell, 2013 - irbis-nbuv.gov.ua
… polyploid) genomes; – elucidation of features and identifying the key factors and driving forces
of genomic … , but also the function of their genome, including the biosynthesis of secondary …

Mapping the driving forces of chromosome structure and segregation in Escherichia coli

NJ Kuwada, KC Cheveralls, B Traxler… - Nucleic acids …, 2013 - academic.oup.com
… rapid and faithful replication and segregation of the genome to the daughter cells. Although it
has … Locus dynamics are organized into four time intervals of motion: (i) Pre-Replication ; (ii) …