Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton

LE Flagel, JF Wendel, JA Udall - BMC genomics, 2012 - Springer
… of polyploidy and duplicate gene evolution. We demonstrate that cotton genes have
experienced an increased rate of molecular evolution following duplication by polyploidy, and that …

Duplicated genes evolve independently after polyploid formation in cotton

RC Cronn, RL Small, JF Wendel - Proceedings of the …, 1999 - National Acad Sciences
… in cotton, there was no evidence of interaction among duplicated genes in the allopolyploid.
… Our results indicate that most duplicated genes in allopolyploid cotton evolve independently …

Duplicate gene expression in allopolyploid Gossypiumreveals two temporally distinct phases of expression evolution

L Flagel, J Udall, D Nettleton, J Wendel - BMC biology, 2008 - Springer
… study the evolution of duplicate gene expression in recent polyploids because five diverse
allopolyploid … (A) Phylogentic relationships among the cotton accessions used in this study. An …

Evolutionary rate variation, genomic dominance and duplicate gene expression evolution during allotetraploid cotton speciation

LE Flagel, JF Wendel - New Phytologist, 2010 - Wiley Online Library
… Here, we describe the evolution of gene expression among a diversified cohort of five
allopolyploid species in the cotton genus (Gossypium). Using this phylogenetic framework and …

Parallel domestication, convergent evolution and duplicated gene recruitment in allopolyploid cotton

R Hovav, B Chaudhary, JA Udall, L Flagel… - Genetics, 2008 - academic.oup.com
duplicate gene expression patterns accompanying the transition from wild to domesticated
cotton … This study suggests that temporal partitioning of duplicate gene expression may, in …

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

R Peng, Y Xu, S Tian, T Unver, Z Liu… - Proceedings of the …, 2022 - National Acad Sciences
… (C) Evolution of the allopolyploid cotton clade, formed following hybridization between an …
origin of allopolyploid cottons (35). Although the A T genome of tetraploid cotton is more …

Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton

G Hu, CE Grover, DL Vera, PY Lung… - … and Evolution, 2024 - academic.oup.com
… and doubling, we also examined duplicated gene expression patterns to … gene regulation
in allopolyploid cotton. Taken together, our study provides a detailed view of the evolutionary

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

ZJ Chen, A Sreedasyam, A Ando, Q Song… - Nature …, 2020 - nature.com
evolution and diversification for all five allopolyploid cotton species, including economically
important Upland and Pima cottons… After whole-genome duplication, duplicate genes may be …

Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing

JT Page, MD Huynh, ZS Liechty, K Grupp… - G3: Genes …, 2013 - academic.oup.com
… between duplicate gene copies. … allopolyploid cottons, we compiled a database of SNPs
between the various genomes studied. Our second objective was to describe genome evolution

[HTML][HTML] Asymmetric evolution and domestication in allotetraploid cotton (Gossypium hirsutum L.)

L Fang, X Guan, T Zhang - The Crop Journal, 2017 - Elsevier
… As a result, cotton is a model for polyploid genome evolution and … of allopolyploid cotton, we
investigated asymmetric evolution and … diversification of duplicated genes [25]. Allotetraploid …