Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome

PE Larsen, A Sreedasyam, G Trivedi, GK Podila… - BMC Systems …, 2011 - Springer
… The harvested mycorrhizal RNA is a mixture of transcripts … , we sequenced the mycorrhizal
transcriptome and identified the … The predicted ectomycorrhizal metabolome was constructed …

Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak tree

M Sebastiana, A Gargallo-Garriga, J Sardans… - Scientific reports, 2021 - nature.com
… oak mycorrhizal roots … analysis confirmed that the metabolome of mycorrhizal oak roots is
significantly different from that of non-inoculated roots. Since in our experiment the mycorrhizal

Dual transcriptomic and metabolomic analyses provide novel insights into the role of vitamins A and B metabolism in ectomycorrhizal symbiosis between Pinus yunnanensis and …

K Su, J Yuan, R Wang, L Huang, J Zhan… - Physiologia …, 2024 - Wiley Online Library
transcriptome and qRT-PCR analysis. The same three samples that were used for transcriptome
analysis… , were selected for non-targeted metabolome analyses. Because it is difficult to …

Combined metabolome and transcriptome analyses reveal the effects of mycorrhizal fungus Ceratobasidium sp. AR2 on the flavonoid accumulation in Anoectochilus …

Y Zhang, Y Li, X Chen, Z Meng, S Guo - International Journal of …, 2020 - mdpi.com
… hybridum were induced by mycorrhizal fungus through transcriptome analysis. Schliemann
et al. [… by mycorrhizal fungus Glomus intraradices through metabolome analyses. In our study, …

Mycorrhiza-triggered transcriptomic and metabolomic networks impinge on herbivore fitness

M Kaling, A Schmidt, F Moritz, M Rosenkranz… - Plant …, 2018 - academic.oup.com
… that ectomycorrhizae prime wounding responses and shift resources from constitutive
phenol-based to specialized protective compounds. Consequently, symbiosis with ectomycorrhizal

Transcriptomics and metabolomics reveal the changes induced by arbuscular mycorrhizal fungi in Panax quinquefolius L.

Z Ran, X Chen, R Li, W Duan, Y Zhang… - Journal of the …, 2023 - Wiley Online Library
… We selected 6 DEGs to verify the accuracy of transcriptome sequencing results using qRT-PCR
which with increased and decreased expression levels, and these DEGs belong to the …

Prediction of an Ectomycorrhizal Metabolome from Transcriptomic Data

PE Larsen, LJ Cseke, FR Collart - Molecular Microbial Ecology …, 2013 - Wiley Online Library
… a predicted model of the ECM metabolome. The model is consistent … analysis methods used
here for predicting metabolomic models of mycorrhizal systems from deep RNA sequencing

Exploring the transcriptome of mycorrhizal interactions

A Kohler, E Tisserant - Advances in Botanical Research, 2014 - Elsevier
… The most recent ones, microarrays and RNA sequencing, are compared in this chapter with
a … interactions, in order to predict the ectomycorrhizal metabolome of poplar and Laccaria …

Metabolome adjustments in ectomycorrhizal Populus × canescens associated with strong promotion of plant growth by Paxillus involutus despite a very low root …

A Szuba, Ł Marczak, I Ratajczak - Tree Physiology, 2020 - academic.oup.com
… We examined the C/N status and performed metabolomic analyses of C-, P- and … mycorrhizal
root tips would result in low signals of resource exchange (i) and relatively low metabolome

Transcriptomics and metabolomics reveal effect of arbuscular mycorrhizal fungi on growth and development of apple plants

S Jing, Y Li, L Zhu, J Su, T Yang, B Liu, B Ma… - Frontiers in Plant …, 2022 - frontiersin.org
analysis of metabolomic and transcriptomic datasets between the roots and shoots of apple
plants before and after inoculation with AMF. Based on our analysistranscriptome analysis of …