The electrostatic contribution to the B to Z transition of DNA
… Indeed, we find that the overall electrostatic contribution to the relative stability of Z-DNA …
We have found here that the electrostatic contribution to the transition free energy favors Z-DNA. …
We have found here that the electrostatic contribution to the transition free energy favors Z-DNA. …
The role of electrostatics in the B to A transition of DNA: From solution to assembly
L Rudd, DJ Lee, AA Kornyshev - Journal of Physics: Condensed …, 2007 - iopscience.iop.org
… us to rationalize the A to B transition of DNA in solution and in … electrostatic interactions are
strong enough, alone, to induce the transition independently of other energetic contributions, …
strong enough, alone, to induce the transition independently of other energetic contributions, …
A simple explanation of the electrostatics of the B-to-Z transition of DNA.
M Gueron, JP Demaret - Proceedings of the National …, 1992 - National Acad Sciences
… (eg, sequences of alternating GC), which occurs at molar salt concentrations, the
electrostatic contribution to the free energy difference, 8F = Fz - FB, can be determined experimentally, …
electrostatic contribution to the free energy difference, 8F = Fz - FB, can be determined experimentally, …
Electrostatic interactions in biological DNA-related systems
AG Cherstvy - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
… DNA sequences that experience this transition at larger [DNA] give rise to right-handed … the
analysis, to minimize the contribution of DNA charges from the neighboring strand across the …
analysis, to minimize the contribution of DNA charges from the neighboring strand across the …
Electrostatic and non-electrostatic contributions to the binding free energies of anthracycline antibiotics to DNA
M Baginski, F Fogolari, JM Briggs - Journal of molecular biology, 1997 - Elsevier
… (van der Waals and other force field terms) to the free energy change for the DNA
conformational transition from the regular B-form to the unwound form (the last term in equation (4)) …
conformational transition from the regular B-form to the unwound form (the last term in equation (4)) …
Powering DNA repair through substrate electrostatic interactions
YL Jiang, Y Ichikawa, F Song, JT Stivers - Biochemistry, 2003 - ACS Publications
… the DNA repair enzyme uracil DNA glycosylase (… contribution of electrostatic interactions
between four essential phosphodiester groups of the DNA substrate and the cationic transition …
between four essential phosphodiester groups of the DNA substrate and the cationic transition …
Electrostatic interaction between helical macromolecules in dense aggregates: an impetus for DNA poly-and meso-morphism
AA Kornyshev, S Leikin - Proceedings of the National …, 1998 - National Acad Sciences
… electrostatic interactions in DNA aggregates and investigate their role in the structural and
packing transitions… could calculate their contribution into the electrostatic interaction energy. In …
packing transitions… could calculate their contribution into the electrostatic interaction energy. In …
DNA cholesteric phases: The role of DNA molecular chirality and DNA− DNA electrostatic interactions
AG Cherstvy - The Journal of Physical Chemistry B, 2008 - ACS Publications
… This steric contribution from DNA superhelical shape thus counteracts the tendency of formation
… on the lattice that could trigger cholesteric-to-hexagonal phase transition at large [DNA]. …
… on the lattice that could trigger cholesteric-to-hexagonal phase transition at large [DNA]. …
Electrostatic effects on the stability of condensed DNA in the presence of divalent cations
JG Duguid, VA Bloomfield - Biophysical journal, 1996 - cell.com
… evaluate the electrostatic contributions to the relative stability of various DNA conformations
(A… shows the electrostatic component of AG for the transition from B-DNA to other forms. At 50 …
(A… shows the electrostatic component of AG for the transition from B-DNA to other forms. At 50 …
Electrostatic contribution to the energy of binding of aromatic ligands with DNA
VV Kostjukov, NM Khomytova… - Biopolymers …, 2008 - Wiley Online Library
… may be analyzed in terms of a two-step process15, 16: formation of the intercalation cavity
inside the DNA duplex (ie transition of the DNA helix from a regular B-form into an unwound …
inside the DNA duplex (ie transition of the DNA helix from a regular B-form into an unwound …
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