[HTML][HTML] The role of reorganization energy in rational enzyme design

M Fuxreiter, L Mones - Current Opinion in Chemical Biology, 2014 - Elsevier
… developing novel enzymatic activities. Catalytic efficiencies of man-made enzymes however
… The discrepancy between laboratory and naturally evolved enzymes suggests that a major …

Tailoring new enzyme functions by rational redesign

F Cedrone, A Ménez, E Quéméneur - Current opinion in structural biology, 2000 - Elsevier
enzyme specificity. The response must be more guarded, though, in terms of redesigning
enzyme … recent trends in the rational redesign of enzyme substrate specificity and mechanisms, …

Rational Redesign of Enzymes

JE Nielsen - Enzyme Functionality, 2003 - taylorfrancis.com
… In the following sections, I will focus mainly on what we know about enzymes, on how
they work, and on what rational enzyme engineering studies have told us about enzymes. …

[HTML][HTML] Redesigning enzymes for biocatalysis: exploiting structural understanding for improved selectivity

Y Ding, G Perez-Ortiz, J Peate… - Frontiers in Molecular …, 2022 - frontiersin.org
… Here, we explore efforts to rationally modify enzymes … of enzymes where links between
enzyme function and structure have been made, thus enabling rational changes to the enzyme

Rational redesign of enzyme via the combination of quantum mechanics/molecular mechanics, molecular dynamics, and structural biology study

HY Lin, X Chen, J Dong, JF Yang, H Xiao… - Journal of the …, 2021 - ACS Publications
enzyme engineering. A major challenge in engineering α-ketoglutarate-dependent oxygenases
is to develop a rational … , we report a strategy for rational redesign of a model enzyme, 4-…

Computational enzyme redesign: large jumps in function

Y Cui, J Sun, B Wu - Trends in Chemistry, 2022 - cell.com
… With the improvement of enzyme redesign algorithms, model-… advance the field of enzyme
redesign with the accumulation of … the field of computational enzyme redesign. We anticipate a …

Semi-rational approaches to engineering enzyme activity: combining the benefits of directed evolution and rational design

RA Chica, N Doucet, JN Pelletier - Current opinion in biotechnology, 2005 - Elsevier
Rational design, semi-rational design or whole-gene randomization each refer to multiple
methodologies, as outlined in the text. The enzyme … semi-rational design of enzyme activities …

Reengineering the glutathione S-transferase scaffold: A rational design strategy pays off

PC Babbitt - Proceedings of the National Academy of …, 2000 - National Acad Sciences
rational and arational† redesign of these enzymes to create new biocatalysts of differing
specificities. Although these attempts have been useful in identifying structural elements that …

Engineering the properties of a cold active enzyme through rational redesign of the active site

I Tsigos, K Mavromatis… - European Journal of …, 2001 - Wiley Online Library
… first example in which rational redesign of residues, at or close to the active site, has been
used to demonstrate that the psychrophilic character of an enzyme can be strongly affected by …

[HTML][HTML] Rational redesign of glucose oxidase for improved catalytic function and stability

JT Holland, JC Harper, PL Dolan, MM Manginell… - PloS one, 2012 - journals.plos.org
… more ferrocenecarboxylic acid mediator to the enzyme resulting in improved stability and …
of the sequence and structure-function similarity in GOx and enzymes homologous to it from …