A DNA methylation atlas of normal human cell types

N Loyfer, J Magenheim, A Peretz, G Cann, J Bredno… - Nature, 2023 - nature.com
… Finally, we analysed whole-genome methylomes from ENCODE 5 and the Roadmap
Epigenomics atlas 4 using our atlas (based on 25 markers per cell type). Deconvolution of some …

A comprehensive epigenome atlas reveals DNA methylation regulating skeletal muscle development

Y Yang, X Fan, J Yan, M Chen, M Zhu… - Nucleic acids …, 2021 - academic.oup.com
… Mechanistically, DNA methylation affected the … DNA methylation/SP1/IGF2BP3 axis in
skeletal myogenesis. Our results highlight the function and regulation of dynamic DNA methylation

Characterizing DNA methylation alterations from the cancer genome atlas

DJ Weisenberger - The Journal of clinical investigation, 2014 - Am Soc Clin Investig
… This Review summarizes the TCGA DNA methylation findings to date, focusing on the …
relationship between DNA methylation profiles and chromatin modifiers, and epigenetic silencing …

A human DNA methylation atlas reveals principles of cell type-specific methylation and identifies thousands of cell type-specific regulatory elements

N Loyfer, J Magenheim, A Peretz, G Cann, J Bredno… - Biorxiv, 2022 - biorxiv.org
DNA methylation is a fundamental epigenetic mark that governs chromatin organization,
cell identity, and gene expression. Here we describe a human methylome atlas, … of the atlas

The human epigenome browser at Washington University

X Zhou, B Maricque, M Xie, D Li, V Sundaram… - Nature …, 2011 - nature.com
… in which we identify the tissue-specific DNA methylation pattern of a long terminal repeat (…
the Human Epigenome Browser displaying the epigenomic landscape of bivalent domains. …

DNA methylation atlas of the mouse brain at single-cell resolution

H Liu, J Zhou, W Tian, C Luo, A Bartlett, A Aldridge… - Nature, 2021 - nature.com
… of hundreds of cell types in the mouse brain, our DNA methylation atlas establishes the
epigenetic basis for neuronal diversity and spatial organization throughout the mouse cerebrum. …

Correlation patterns between DNA methylation and gene expression in the cancer genome atlas

JCG Spainhour, HS Lim, SV Yi, P Qiu - Cancer informatics, 2019 - journals.sagepub.com
DNA methylation is a form of epigenetic modification that has been shown to play a … Atlas
(TCGA) have become readily accessible, our understanding of the role of DNA methylation can …

Comprehensive analysis of DNA methylation data with RnBeads

Y Assenov, F Müller, P Lutsik, J Walter, T Lengauer… - Nature …, 2014 - nature.com
… use a more up to date browser (or turn off compatibility mode in … DNA methylation is an
important epigenetic mark and widely … now available for mapping DNA methylation genome wide, …

Analysing and interpreting DNA methylation data

C Bock - Nature Reviews Genetics, 2012 - nature.com
browser version with limited support for CSS. To obtain the best experience, we recommend
you use a more up to date browser (… will witness a surge of epigenomes being generated by …

The Pancancer DNA methylation trackhub: a window to the cancer genome atlas epigenomics data

I Mallona, A Sierco, MA Peinado - CpG Islands: Methods and Protocols, 2018 - Springer
DNA methylation boundaries, the aberrant DNA methylation of … hypermethylation of the
Homeobox HOXA gene cluster and the EN1 gene in multiple cancer types. The DNA methylation