… transcription network structure. To attain this goal we used network component analysis (NCA…
that reflects the underlying biological structure of regulatory networks (25–27). NCA is able …

… The aims of our analysis were as follows: (1) to integrate the independent datasets, which
will help to overcome the limitations caused by sample size and statistical method bias; (2) to …

… and transcription network connectivity data, genetic knockouts, and network component
analysis (NCA) to map the initial isobutanol response network of Escherichia coli under aerobic …

… A systematic workflow of AMR gene interaction network analysis of E. coli O157:H7 strain.
The list … The interactions are integrated with the sources like genomic context, high throughput …

… To search key nodes in the integrated network, we analyzed the degree distribution of each
node of the integrated network. We also developed a new algorithm based on the full path …

… activity of TFs in Escherichia coli. To study this integrated network we computed a set of
network measurements followed by principal component analysis (PCA), investigated the …

… provide a network representation of the integrated gene regulatory and metabolic system for
… : We present an integrated network representation of gene regulation and metabolism of E. …

… In this work, Escherichia coli was used to model the bacterial stress response. A Protein-Protein
Interaction Network was generated by integrating differentially expressed genes in eight …

… network of Escherichia coli is currently the best-understood regulatory network of a single …
Motivated by statistical evidence, suggesting a hierarchical modular architecture in this network…

… We focused on a genome‐scale model for Escherichia coli, a gram‐negative, facultative …
transduction network (EcoST) and its integration to the transcriptional and metabolic network …