Optimality in evolution: new insights from synthetic biology

MGJ de Vos, FJ Poelwijk, SJ Tans - Current opinion in biotechnology, 2013 - Elsevier
… , in media containing either the antibiotic cefotaxime or piperacillin with clavulanic acid, the
optimum genotype of the antibiotic resistance protein TEM β-lactamase in Escherichia coli is …

Sequence Specific Modeling of E. coli Cell-Free Protein Synthesis

M Vilkhovoy, N Horvath, CH Shih… - … synthetic biology, 2018 - ACS Publications
… is a widely used research tool in systems and synthetic biology. However, if CFPS is to become
… based modeling to evaluate the performance of E. coli cell-free protein synthesis. A core …

Genome Editing Tools for Escherichia coli and Their Application in Metabolic Engineering and Synthetic Biology

C Sathesh‐Prabu, SK Lee - Emerging Areas in Bioengineering, 2018 - Wiley Online Library
… , for instance, and it is widely used in synthetic biology and metabolic engineering [6–9] to
… to Escherichia coli, the most prominent biotechnological host of interest, are discussed. E. …

A Biosensor Strategy for E. coli Based on Ligand-Dependent Stabilization

BM Brandsen, JM Mattheisen, T Noel… - … synthetic biology, 2018 - ACS Publications
… Here, we develop this strategy in Escherichia coli, with increased biosensor stability due
to ligand binding leading to increased expression of a metabolic reporter gene and hence …

Composability of regulatory sequences controlling transcription and translation in Escherichia coli

S Kosuri, DB Goodman, G Cambray… - Proceedings of the …, 2013 - National Acad Sciences
… levels precisely hinders our ability to engineer biological systems. Using well-characterized …
on prediction or standardization, we can screen synthetic libraries for desired behavior. …

Systems metabolic engineering strategies: integrating systems and synthetic biology with metabolic engineering

KR Choi, WD Jang, D Yang, JS Cho, D Park… - Trends in …, 2019 - cell.com
… (E) Systems biology, synthetic biology, and evolutionary engineering tools accelerate
metabolic flux optimization to maximize target chemical production. (F) Fermentation goes in …

An Escherichia coli Chassis for Production of Electrically Conductive Protein Nanowires

T Ueki, DJF Walker, TL Woodard, KP Nevin… - … synthetic biology, 2020 - ACS Publications
… of Escherichia coli to express e-PNs by introducing a plasmid that contained an inducible
operon with E. … We thought that Escherichia coli might be an ideal chassis for e-PN fabrication. …

On the record with E. coli DNA

O Borkowski, C Gilbert, T Ellis - Science, 2016 - science.org
Synthetic biology uses DNA programs to add new functions into living cells. By expressing
transcription factors, microbes such as Escherichia coli … In synthetic biology, the use of DNA …

[HTML][HTML] The path to next generation biofuels: successes and challenges in the era of synthetic biology

C Dellomonaco, F Fava, R Gonzalez - Microbial Cell Factories, 2010 - Springer
Synthetic biology and metabolic engineering have been extensively used in S. cerevisiae,
Zymomonas mobilis and Escherichia coli to enhance ethanol fermentation (Fig. 2) [27, 35–38]…

CRISPathBrick: Modular Combinatorial Assembly of Type II-A CRISPR Arrays for dCas9-Mediated Multiplex Transcriptional Repression in E. coli

BF Cress, OD Toparlak, S Guleria… - … synthetic biology, 2015 - ACS Publications
… in the fields of systems biology and synthetic biology, allowing the design of intricate synthetic
circuits and the interrogation of complex natural biological systems. Until recently, however…