Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis

L Da Sacco, A Baldassarre, A Masotti - International journal of molecular …, 2011 - mdpi.com
… The main features and properties of long non-coding RNAs will be briefly presented in the
… in the study, functional analysis or simply annotation of known (and unknown) lncRNAs. …

RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening

B Zhu, Y Yang, R Li, D Fu, L Wen… - … of experimental botany, 2015 - academic.oup.com
Recently, long non-coding RNAs (lncRNAs) have been shown to play critical regulatory roles
in model plants, such as Arabidopsis, rice, and maize. However, the presence of lncRNAs …

Identification and function of long non-coding RNA

C Ernst, CC Morton - Frontiers in cellular neuroscience, 2013 - frontiersin.org
… In this review, we describe issues of key importance in functional assessment of lncRNA …
various roles, Long non-coding (lnc) RNAs participate in guidance of large protein complexes to …

Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data

K Zhang, K Huang, Y Luo, S Li - BMC genomics, 2014 - Springer
Long non-coding RNAs (lncRNAs) regulate embryonic development and cell fate decision …
analysis of mouse cleavage stage embryonic lncRNA profiles based on public single-cell RNA

Identification and functional analysis of long non-coding RNA (lncRNA) in response to seed aging in rice

Y Zhang, F Fan, Q Zhang, Y Luo, Q Liu, J Gao, J Liu… - Plants, 2022 - mdpi.com
Many lncRNAs have been shown to play a vital role in aging processes. However, how lncRNAs
regulate seed aging remains unknown. In this study, we performed whole transcriptome …

Temporal expression and functional analysis of long noncoding RNA s in colorectal cancer initiation

L Dai, J Li, Z Dong, Y Liu, Y Chen… - Journal of cellular …, 2019 - Wiley Online Library
Function analysis deregulated long non-coding RNAs (lncRNAs) and coding RNAs. A, Gene
ontology biological process term enrichment of the four modules (blue, green, grey60 and …

Differential long non-coding RNA expression profile and function analysis in primary Sjogren's syndrome

X Chen, Q Cheng, Y Du, L Liu, H Wu - BMC immunology, 2021 - Springer
… This study aimed to investigate differentially expressed long non-coding RNA (lncRNA)
in peripheral blood mononuclear cells (PBMCs) in patients with pSS to identify lncRNAs that …

[HTML][HTML] Identification and functional analysis of long non-coding RNAs in human and mouse early embryos based on single-cell transcriptome data

J Qiu, Z Ren, J Yan - Oncotarget, 2016 - ncbi.nlm.nih.gov
… However, the dynamics and functions of long non-coding RNAs (… analysis of human
and mouse early-stage embryonic lncRNAs was performed based on public single-cell RNA

Transcriptomic and functional analyses unveil the role of long non-coding RNAs in anthocyanin biosynthesis during sea buckthorn fruit ripening

G Zhang, D Chen, T Zhang, A Duan, J Zhang… - DNA …, 2018 - academic.oup.com
… We assembled and annotated 9,008 long non-coding RNAs (lncRNAs) in sea buckthorn
fruits, and identified 118 differentially expressed lncRNAs (DE-lncRNAs) and 32 differentially …

Functional analysis of long intergenic non-coding RNAs in phosphate-starved rice using competing endogenous RNA network

XW Xu, XH Zhou, RR Wang, WL Peng, Y An… - Scientific reports, 2016 - nature.com
Long integrate non-coding RNAs (lincRNAs) exist in both mammalian and plants and may …
7,8,9 , however, the function of lincRNAs that response to Pi starvation are poorly understood. …