… in gene annotation indicate that high-quality gene models can … TE annotations to a level
comparable to that of gene models, … TE annotation pipeline, analogous to systems used for gene …

… of transposable elements (TEs) to genome structure and evolution as well as their impact on
genome sequencing, assembly, annotation … approaches to identify and annotate TEs in the …

… Here we illustrate the necessity of a coherent annotation strategy when analyzing genome
drafts for TEs. To do so, we compare the results of TE annotations using minimal versus …

… Class I transposable elements can be classified into three … nuclear elements) and SINEs
(short interspersed nuclear elements… in genome annotation. Computer-based predictions for the …

… genomic frequency and returns an assembly of TEs without genome annotation. d | Plot of
the percentage of the human genome annotated as TEs by various methods. Percentages are …

… Transposable elements (TEs) or transposons make up a large … genome range from 10 to
25% (Mao et al., 2000; Turcotte et al., 2001). In addition, the TE complement of the rice genome …

… of transposable element (TE) copies. TE-derived sequence decays in the genome over time,
… However, accurate annotation and description of these elements is crucial in understanding …

… are highly specific to classes of transposable elements. … -genome TE annotation based on
the curated library was used as the ground-truth annotation for benchmarking of TE annotation …

… The accelerating pace of genome sequencing throughout the tree of life is driving the
need for improved unsupervised annotation of genome components such as transposable …

… from transposon activity. A careful comparison of genome-wide annotations of both genes and
TEs … We noted >4000 non-syntenic maize gene annotations located within annotated TEs, …