A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species

S Liu, L Lin, P Jiang, D Wang, Y Xing - Nucleic acids research, 2011 - academic.oup.com
… by the high-density HJAY array and real-time qPCR, we systematically assessed how
accurately RNA-Seq can reveal gene expression differences between closely related species. …

Using DNA microarrays to study gene expression in closely related species

A Oshlack, AE Chabot, GK Smyth, Y Gilad - Bioinformatics, 2007 - academic.oup.com
… that gene expression studies within species can be performed using surrogate microarray
platforms for a closely related species. … that as long as orthologous genes are known, a human …

Divergence in gene expression within and between two closely related flycatcher species

S Uebbing, A Künstner, H Mäkinen… - Molecular …, 2016 - Wiley Online Library
… For comparison with chicken, we used three gene expression data sets of that species (NCBI
Accession nos. PRJNA143627 (Brawand et al. 2011), PRJEB4677, PRJNA248570). …

Using high-density exon arrays to profile gene expression in closely related species

L Lin, S Liu, H Brockway, J Seok, P Jiang… - Nucleic acids …, 2009 - academic.oup.com
… of gene expression profiles between species provide significant insight into gene regulation…
and intuitive approach for global expression profiling of closely related species, using high-…

Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world

ST O'Neil, JDK Dzurisin, CM Williams… - Molecular …, 2014 - Wiley Online Library
… on gene expression as related to previous work on fitness-based local adaptation for these
populations (Pelini et al. 2009). Given limited microarray resources and deme sampling, but …

Duplicate genes increase expression diversity in closely related species and allopolyploids

M Ha, ED Kim, ZJ Chen - Proceedings of the National …, 2009 - National Acad Sciences
expression divergence between two closely related speciesGene expression changes
coevolve with promoter … The gene expression changes in closely related species and …

A robust (re-) annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species

M Torres-Oliva, I Almudi, AP McGregor, N Posnien - BMC genomics, 2016 - Springer
gene expression levels of different genes within a species, … gene expression in different
species. Here we show that the published genomes of three closely related Drosophila species, …

Growth hormone differentially regulates growth and growth-related gene expression in closely related fish species

PR Biga, J Meyer - Comparative Biochemistry and Physiology Part A …, 2009 - Elsevier
… The current study was conducted to compare gene expression profiles … on gene expression
related to metabolic homeostasis, we analyzed glucose transporter protein (GLUT4) mRNA

Evolution of patterns of differential gene expression: A comparison of the temporal and spatial patterns of lsozyme locus expression in two closely related fish species  …

DP Philipp, WF Childers… - Journal of Experimental …, 1979 - Wiley Online Library
… between related species. Our results indicate that when comparing patterns of gene
expression between two species within the same genus or between two species in closely related

The Cyprinodon variegatus genome reveals gene expression changes underlying differences in skull morphology among closely related species

ES Lencer, WC Warren, R Harrison, AR McCune - BMC genomics, 2017 - Springer
… In this study we identify modifications to the expression of genes at four developmental …
We find that gene expression differs significantly across recently diverged species of pupfish…