[HTML][HTML] Normalization of gene expression measurements in tumor tissues: comparison of 13 endogenous control genes

JB de Kok, RW Roelofs, BA Giesendorf… - Laboratory …, 2005 - Elsevier
… Our approach identified HPRT as the single best reference gene that could be used as
an … genes. We recommend this gene for future studies to standardize gene expression

Normalization for cDNA microarry data

YH Yang, S Dudoit, P Luu… - … : optical technologies and …, 2001 - spiedigitallibrary.org
… This paper describes normalization methods for different … We illustrate the different approaches
using gene expression … and normalization (see Ëection 4 below) the gene expression

Binary analysis and optimization-based normalization of gene expression data

I Shmulevich, W Zhang - Bioinformatics, 2002 - academic.oup.com
… we propose to analyse gene expression data entirely in the … Genetic Algorithms (GAs), for
normalizing gene expression data. This is a necessary step before quantizing gene expression

[PDF][PDF] Centralization: a new method for the normalization of gene expression data

A Zien, T Aigner, R Zimmer, T Lengauer - BIOINFORMATICS-OXFORD-, 2001 - Citeseer
… evaluation of normalization is unavailable, we demonstrated the robustness of centralization
and the weaknesses of common competing methods on a real life gene expression data set…

Identification of four soybean reference genes for gene expression normalization

M Libault, S Thibivilliers, DD Bilgin… - The Plant …, 2008 - Wiley Online Library
… These genes should be useful for normalization of gene expression studies in soybean, an
… PCR, quantification of gene expression requires normalization against reference genes. Most …

[HTML][HTML] How to do quantile normalization correctly for gene expression data analyses

Y Zhao, L Wong, WWB Goh - Scientific reports, 2020 - nature.com
… one popular normalization technique properly, the Quantile normalization (QN) method.
QN is extremely popular and produces very well-aligned distributions such that QN-normalized

[HTML][HTML] Empirical comparison of cross-platform normalization methods for gene expression data

J Rudy, F Valafar - BMC bioinformatics, 2011 - Springer
… shows the smallest loss in gene detection. We provide an R package, CONOR, capable of
performing the nine cross-platform normalization methods considered. The package can be …

Feature extraction and normalization algorithms for high‐density oligonucleotide gene expression array data

EE Schadt, C Li, B Ellis… - Journal of Cellular …, 2001 - Wiley Online Library
… , and for normalizing two or more arrays. It is well known that the comparison of gene expression
results across experiments relies crucially on having an effective normalization scheme. …

SNOMAD (Standardization and NOrmalization of MicroArray Data): web-accessible gene expression data analysis

C Colantuoni, G Henry, S Zeger, J Pevsner - Bioinformatics, 2002 - academic.oup.com
… ratio (Figure 1a, Right) is a plot which effectively shows differences in gene expression (Y
axis) across the range of gene expression levels (X axis). The normalization processes …

[HTML][HTML] Effect of normalization on statistical and biological interpretation of gene expression profiles

S Qin, J Kim, D Arafat, G Gibson - Frontiers in genetics, 2013 - frontiersin.org
… of the genetic analysis of gene expression is the impact of post-probe level normalization
on … methods for normalization of an Illumina bead-array gene expression profiling dataset …