[HTML][HTML] SARS-CoV-2 variants of concern are emerging in India

J Singh, SA Rahman, NZ Ehtesham, S Hira… - Nature medicine, 2021 - nature.com
genetic sequencing, with capacity for over 30,000 sequences per month, the surveillance
of SARS-CoV-2 variants has been slow and has involved only ~2,700 sequenced samples …

[PDF][PDF] Genomic sequencing of SARS-CoV-2: a guide to implementation for maximum impact on public health, 8 January 2021

World Health Organization - 2021 - apps.who.int
SARS-CoV-2 gene sequencing can be used in many different areas, including improved
diagnostics, development of countermeasures, and investigation of disease epidemiology. …

Viral sequencing to investigate sources of SARS-CoV-2 infection in US healthcare personnel

KM Braun, GK Moreno, A Buys… - Clinical Infectious …, 2021 - academic.oup.com
… Laboratories responsible for obtaining and genetic sequence data included here, if not
our own, are documented in Supplementary File 2. An interactive view of this Nextstrain …

[HTML][HTML] Pango lineage designation and assignment using SARS-CoV-2 spike gene nucleotide sequences

Á O'Toole, OG Pybus, ME Abram, EJ Kelly, A Rambaut - BMC genomics, 2022 - Springer
… spike-only sequences, some spike-only sequences are shared among … of SARS-CoV-2
lineages using subgenomic sequences we introduce the notion of designating such sequences

[HTML][HTML] Genetic spectrum and distinct evolution patterns of SARS-CoV-2

S Liu, J Shen, S Fang, K Li, J Liu, L Yang… - Frontiers in …, 2020 - frontiersin.org
sequences, we also aligned four bat coronavirus sequences to Wuhan-Hu-1 complete
genome. The ratios of variants between Wuhan-Hu-1 and bats were 3.8% (RaTG13), 11.1% (bat-…

Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants

A Crits-Christoph, RS Kantor, MR Olm, ON Whitney… - MBio, 2021 - Am Soc Microbiol
… Viral genome sequencing has guided our understanding of the … of genetic diversity of
SARS-CoV-2 during the COVID-19 pandemic. SARS-CoV-2 viral genomes are usually sequenced

SARS-CoV-2: camazotz's curse

KB Anand, S Karade, S Sen, RM Gupta - medical journal armed forces …, 2020 - Elsevier
… However their study also revealed that S gene of 2019-nCoV had the lowest sequence
identity with bat-SL-CoVZC45 and bat-SL-CoVZXC21, at only around 75%. Zhou et al. …

[HTML][HTML] High genetic barrier to SARS-CoV-2 polyclonal neutralizing antibody escape

F Schmidt, Y Weisblum, M Rutkowska, D Poston… - Nature, 2021 - nature.com
… Exploiting the fact that SARS-CoV is poorly neutralized by SARS-CoV-2 convalescent plasma,
we … spike proteins in which RBD sequences were exchanged (SARS-CoV-2(1-RBD) and …

[HTML][HTML] High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants

RS Fontenele, S Kraberger, J Hadfield, EM Driver… - Water Research, 2021 - Elsevier
genetic correlation analysis combined with SNVs analysis using wastewater sampling can
provide a comprehensive snapshot of the SARS-CoV-2 geneticSARS-CoV-2 sequences from …

[HTML][HTML] Genetic characteristics and phylogeny of 969-bp S gene sequence of SARS-CoV-2 from Hawai 'i reveals the worldwide emerging P681H mutation

DP Maison, LL Ching, CM Shikuma… - Hawai'i journal of …, 2021 - ncbi.nlm.nih.gov
… This study demonstrates a partial sequence from the first SARS-CoV-2 strain possessing the
P681H non-synonymous mutation. In Hawai‘i, Native Hawaiians and Pacific Islanders have …