Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants

B Mitter, A Petric, MW Shin, PSG Chain… - Frontiers in plant …, 2013 - frontiersin.org
… Here we analyze whole genomes, of PsJN and of eight other … endophytic traits, no unique
gene cluster could be exclusively … It has the biggest genome consisting of two chromosomes …

Multifactor dimensionality reduction: an analysis strategy for modelling and detecting gene-gene interactions in human genetics and pharmacogenomics studies

AA Motsinger, MD Ritchie - Human genomics, 2006 - Springer
… The detection of gene - gene and gene - environment interactions associated with complex
… a single gene, most common diseases are caused by the non-linear interaction of numerous …

Genome-wide strategies for detecting multiple loci that influence complex diseases

J Marchini, P Donnelly, LR Cardon - Nature genetics, 2005 - nature.com
… of interactions between genetic loci with non-negligible marginal effects, how might we design
and analyze genome-… Therefore, we also compared the interaction strategies with one in …

New strategies for identifying gene-gene interactions in hypertension

JH Moore, SM Williams - Annals of medicine, 2002 - Taylor & Francis
… of such gene-gene and gene-environment interactions have been … problem of identifying
gene-gene interactions and describe … complex genetic interactions in essential hypertension. …

Challenges and opportunities in genome-wide environmental interaction (GWEI) studies

H Aschard, S Lutz, B Maus, EJ Duell, TE Fingerlin… - Human genetics, 2012 - Springer
… several evidences of interactions between genes and … in the detection of gene–environment
interaction effects and the … focus on strategies and methodological aspects of genome-…

Integrated proteomics and genomics strategies bring new insight into Candida albicans response upon macrophage interaction

E Fernández-Arenas, V Cabezón, C Bermejo… - Molecular & Cellular …, 2007 - ASBMB
… In conclusion, the combination of genomics, proteomics, and network analyses is a
powerful strategy to better understand the complex host-pathogen interactions. …

Infection and immunity: insights and therapeutic strategies through genomic analysis of the host, pathogen, and host–pathogen interaction

J Simundza - Genome Medicine, 2018 - Springer
… of resistance by using pathogen genomic data, and as a … essential role of genomics in
strategies for surveillance and … a global scale will require increased genomic surveillance in poorly …

Comparative genome analysis of plant ascomycete fungal pathogens with different lifestyles reveals distinctive virulence strategies

Y Wang, J Wu, J Yan, M Guo, L Xu, L Hou, Q Zou - BMC genomics, 2022 - Springer
… Plant pathogens with different lifestyles utilize distinct strategies to interact with their host
plants. Necrotrophs such as the white mold fungus Sclerotinia sclerotiorum and the gray mold …

Common themes in the genome strategies of pathogens

JG Lawrence - Current opinion in genetics & development, 2005 - Elsevier
… of similar genomic alterations, including acquisition of genes by lateral transfer, and genome
… These common features suggest that unicellular pathogens share common strategies for …

Whole-genome strategies for marker-assisted plant breeding

Y Xu, Y Lu, C Xie, S Gao, J Wan, BM Prasanna - Molecular breeding, 2012 - Springer
… -controlled or complex traits, the population size required should consider some additional
factors associated with the target genes, such as gene number, effect, interactions and their …