The bioinformatics tools for the genome assembly and analysis based on third-generation sequencing
… genomic landscapes and mutations relevant for diagnosis and therapy using whole genome
sequencing and de novo genome assembly… related tools for de novo assembly and genome …
sequencing and de novo genome assembly… related tools for de novo assembly and genome …
QUAST: quality assessment tool for genome assemblies
… of finished genomes; the problem of evaluating assemblies of previously unsequenced …
tool for evaluating and comparing genome assemblies. This tool improves on leading assembly …
tool for evaluating and comparing genome assemblies. This tool improves on leading assembly …
Bioinformatics tools for analysing viral genomic data
… new algorithms and software tools are continually needed to … main bioinformatics tools
available for viral genomic research… consensus and de novo genome assembly to variant calling …
available for viral genomic research… consensus and de novo genome assembly to variant calling …
GATB: genome assembly & analysis tool box
… Results: We propose an open-source library dedicated to genome assembly and analysis
to … de-Bruijn graph implementation allowing complex genomes to be processed on desktop …
to … de-Bruijn graph implementation allowing complex genomes to be processed on desktop …
Bioinformatics tools to assess metagenomic data for applied microbiology
OGG Almeida, ECP De Martinis - Applied microbiology and biotechnology, 2019 - Springer
… in large contiguous segments with the aid of genome assembly tools. Most of these … Another
tool for checking the quality of genome assembly is MetaQUAST, which can detect assembly …
tool for checking the quality of genome assembly is MetaQUAST, which can detect assembly …
[PDF][PDF] A new set of bioinformatics tools for genome projects
LG Almeida, R Paixão, RC Souza, GC Costa… - Genet Mol …, 2004 - geneticsmr.com
… To allow the monitoring of the genome assembly evolution, the phrap.out file is analyzed …
to be a useful tool for the management, assembly and annotation of genomes. The information …
to be a useful tool for the management, assembly and annotation of genomes. The information …
CrossMap: a versatile tool for coordinate conversion between genome assemblies
… To the best of our knowledge, no bioinformatics tool is available to convert these “big data” …
, a versatile tool to convert coordinates or annotation files between genome assemblies. It …
, a versatile tool to convert coordinates or annotation files between genome assemblies. It …
[HTML][HTML] A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies
… , of which the former is relatively toilless with the aid of reference genome or proteome …
and evaluation of tools for de novo assembly of genome sequence. The genome assemblers …
and evaluation of tools for de novo assembly of genome sequence. The genome assemblers …
[HTML][HTML] REAPR: a universal tool for genome assembly evaluation
… -assemblies are overlooked. Here we present REAPR, a tool that precisely identifies errors
in genome assemblies … REAPR on complete genomes or de novo assemblies from bacteria, …
in genome assemblies … REAPR on complete genomes or de novo assemblies from bacteria, …
Genome assembly reborn: recent computational challenges
M Pop - Briefings in bioinformatics, 2009 - academic.oup.com
… Visual tools for validating assemblies with the help of mate-pair information are available
in a variety of packages including consed [57], BACCardI [58] and Hawkeye [59]. …
in a variety of packages including consed [57], BACCardI [58] and Hawkeye [59]. …
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