… genomic landscapes and mutations relevant for diagnosis and therapy using whole genome
sequencing and de novo genome assembly… related tools for de novo assembly and genome …

… of finished genomes; the problem of evaluating assemblies of previously unsequenced …
tool for evaluating and comparing genome assemblies. This tool improves on leading assembly …

… new algorithms and software tools are continually needed to … main bioinformatics tools
available for viral genomic research… consensus and de novo genome assembly to variant calling …

… Results: We propose an open-source library dedicated to genome assembly and analysis
to … de-Bruijn graph implementation allowing complex genomes to be processed on desktop …

… in large contiguous segments with the aid of genome assembly tools. Most of these … Another
tool for checking the quality of genome assembly is MetaQUAST, which can detect assembly …

… To allow the monitoring of the genome assembly evolution, the phrap.out file is analyzed …
to be a useful tool for the management, assembly and annotation of genomes. The information …

… To the best of our knowledge, no bioinformatics tool is available to convert these “big data” …
, a versatile tool to convert coordinates or annotation files between genome assemblies. It …

… , of which the former is relatively toilless with the aid of reference genome or proteome …
and evaluation of tools for de novo assembly of genome sequence. The genome assemblers …

… -assemblies are overlooked. Here we present REAPR, a tool that precisely identifies errors
in genome assemblies … REAPR on complete genomes or de novo assemblies from bacteria, …

… Visual tools for validating assemblies with the help of mate-pair information are available
in a variety of packages including consed [57], BACCardI [58] and Hawkeye [59]. …