MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
… ) plays important roles in evolutionary and ecological studies. It becomes routine to utilize …
toolkit, MitoZ, providing a one-click solution from HTS raw reads to genome assembly together …
toolkit, MitoZ, providing a one-click solution from HTS raw reads to genome assembly together …
Complete mitogenome assembly of Selenicereus monacanthus revealed its molecular features, genome evolution, and phylogenetic implications
G Lu, W Wang, J Mao, Q Li, Y Que - BMC Plant Biology, 2023 - Springer
… This study assembled the complete mitogenome of the red … 13,437 bp) mediating genomic
recombination were identified by … the chloroplast genome were identified in the mitogenome, …
recombination were identified by … the chloroplast genome were identified in the mitogenome, …
De novo Assembly and Comparative Analyses of Mitochondrial Genomes in Piperales
… Here, we assembled mitochondrial genomes for … of genome evolution. Specifically, a total
of eight mitochondrial … We first assembled a draft mitochondrial genome of A. fimbriata with …
of eight mitochondrial … We first assembled a draft mitochondrial genome of A. fimbriata with …
MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data
PG Nachtigall, FG Grazziotin… - Briefings in …, 2021 - academic.oup.com
… genomes of several species throughout the tree of life. We noticed that MITGARD can
recover the mitogenomes in … on the phylogenetic and evolutionary aspects of eukaryotes and …
recover the mitogenomes in … on the phylogenetic and evolutionary aspects of eukaryotes and …
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
N Dierckxsens, P Mardulyn, G Smits - Nucleic acids research, 2017 - academic.oup.com
… The evolution in next-generation sequencing (NGS) technology has led to the development
… complete mitochondrial genome, which made it possible to assemble a reliable reference …
… complete mitochondrial genome, which made it possible to assemble a reliable reference …
… of a Complete Mitogenome of Chrysanthemum nankingense Using Oxford Nanopore Long Reads and the Diversity and Evolution of Asteraceae Mitogenomes
S Wang, Q Song, S Li, Z Hu, G Dong, C Song, H Huang… - Genes, 2018 - mdpi.com
… genome/browse#!/organelles/. Accessed on 21 October 2018). The genomic information from
the mitogenomes … used for the investigation of genomic evolution related to the gain/loss of …
the mitogenomes … used for the investigation of genomic evolution related to the gain/loss of …
Mitogenome assembly from genomic multiplex libraries: comparison of strategies and novel mitogenomes for five species of frogs
… Mitogenomes were assembled exclusively with strategy 3, which we employed to assemble
the remaining mitogenomes. … mechanisms of genome evolution (Gissi et al. 2008). Several …
the remaining mitogenomes. … mechanisms of genome evolution (Gissi et al. 2008). Several …
MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads
M Uliano-Silva, JGRN Ferreira, K Krasheninnikova… - BMC …, 2023 - Springer
… evolution of the gene content and structure of mitochondrial … to assemble and annotate
complete mitochondrial genomes. … deployed to assemble mitochondrial genomes from hundreds …
complete mitochondrial genomes. … deployed to assemble mitochondrial genomes from hundreds …
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
… in mitogenome assemblies, ultimately impacting evolutionary analysis [29]. … mitochondrial
genome assembly pipeline (mitoVGP) developed in the framework of the Vertebrate Genomes …
genome assembly pipeline (mitoVGP) developed in the framework of the Vertebrate Genomes …
MEANGS: an efficient seed-free tool for de novo assembling animal mitochondrial genome using whole genome NGS data
MH Song, C Yan, JT Li - Briefings in Bioinformatics, 2022 - academic.oup.com
… , evolutionary … for assembling mitogenomes from animal whole genome NGS data. MEANGS
is programmed in Python3 with an assembly module based on a Short Sequence Assembly …
is programmed in Python3 with an assembly module based on a Short Sequence Assembly …
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