The genome-scale metabolic network analysis of Zymomonas mobilis ZM4 explains physiological features and suggests ethanol and succinic acid production …

KY Lee, JM Park, TY Kim, H Yun, SY Lee - Microbial cell factories, 2010 - Springer
… For the reconstruction of promising genome-scale metabolic model, several steps such as
… Here, we present a genome-scale metabolic model of the Z. mobilis ZM4, ZmoMBEL601, …

Genomescale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis

H Widiastuti, JY Kim, S Selvarasu… - Biotechnology and …, 2011 - Wiley Online Library
mobilis ATCC31821 (ZM4) based on its annotated genome and biochemical … our genome-scale
model were highly consistent with the experimental observations of Z. mobilis ZM4 strain …

A reconciliation of genome-scale metabolic network model of Zymomonas mobilis ZM4

H Nouri, H Fouladiha, H Moghimi, SA Marashi - Scientific Reports, 2020 - nature.com
Zymomonas mobilis ZM4 has recently … mobilis is generally considered as a suitable platform
for genetic engineering because of its GRAS (Generally recognized as safe), genome size, …

Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4

WK Ong, DK Courtney, S Pan… - PLOS Computational …, 2020 - journals.plos.org
… the accuracy and gene-reaction associations of a metabolic model for Zymomonas mobilis
ZM4, an … Gene essentiality predictions made by the draft model were compared to data from …

[HTML][HTML] Construction and application of high-quality genome-scale metabolic model of Zymomonas mobilis to guide rational design of microbial cell factories

Y Wu, Q Yuan, Y Yang, D Liu, S Yang, H Ma - Synthetic and Systems …, 2023 - Elsevier
… In this study, a new genome-scale metabolic model for Z. mobilis ZM4 was constructed
using modelSEED, and then model curation and verification were performed based on the …

Reconstruction of a charge balanced genome-scale metabolic model to study the energy-uncoupled growth of Zymomonas mobilis ZM1

E Motamedian, M Saeidi, SA Shojaosadati - Molecular BioSystems, 2016 - pubs.rsc.org
mobilis ZM1 has a genome structure similar to the ZM4 strain and the two strains showed
similar patterns of gene expression in the microarray analysis of cultures grown under various …

Improved genome annotation for Zymomonas mobilis

S Yang, KM Pappas, LJ Hauser, ML Land… - Nature …, 2009 - nature.com
… version of the ZM4 genome annotation based on the original primary genome sequence,
new … mobilis ZM4 ATCC31821 sequence generated in this study. We generated ∼42.3-Mb …

The genome sequence of the ethanologenic bacterium Zymomonas mobilis ZM4

JS Seo, H Chong, HS Park, KO Yoon, C Jung… - Nature …, 2005 - nature.com
genome sequence of Zymomonas mobilis ZM4 (ATCC31821), an ethanologenic microorganism
of interest for the production of fuel ethanol. The genome … the genome size and relatively …

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and …

S Yang, JM Vera, J Grass, G Savvakis… - Biotechnology for …, 2018 - Springer
… The complete genome of ZM4 and two xylose-utilizing … plasmids in ZM4, which were absent
in the original ZM4 genome … CP4 instead of the previously reported ZM4. This issue became …

Genome-scale transcription-translation mapping reveals features of Zymomonas mobilis transcription units and promoters

JM Vera, IN Ghosh, Y Zhang, AS Hebert, JJ Coon… - Msystems, 2020 - Am Soc Microbiol
… changes to the ZM4 chromosome and plasmid gene annotations (Table 1) as well as new
genomic … Using our revised ZM4 gene annotations, we assessed the genomic distribution of all …