Full-genome sequences of the first two SARS-CoV-2 viruses from India

PD Yadav, VA Potdar, ML Choudhary… - Indian Journal of …, 2020 - journals.lww.com
coronavirus 2 (SARS-CoV-2) has globally affected 195 countries. In India, suspected cases
were screened for SARS-CoV-… study was to characterize SARS-CoV-2 sequences from three …

The genetic sequence, origin, and diagnosis of SARS-CoV-2

H Wang, X Li, T Li, S Zhang, L Wang, X Wu… - European Journal of …, 2020 - Springer
… of full-length genome sequences obtained from infected patients showed that SARS-CoV-2
is similar to severe acute respiratory syndrome coronavirus (SARS-CoV) and uses the same …

Genomic characterization of a novel SARS-CoV-2

RA Khailany, M Safdar, M Ozaslan - Gene reports, 2020 - Elsevier
… extent of molecular variation between the recently sequenced genomes of SARS-CoV-2. …
NC_045512 genome sequence was used for reference and the genomic coordinate in this …

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

M Chiara, AM D'Erchia, C Gissi… - Briefings in …, 2021 - academic.oup.com
… If the aim of the study is to obtain an accurate representation of the genomic sequence of
a novel strain of SARS-CoV-2, de-novo assembly should always be preferred to reference-…

Comparative full-length genome sequence analysis of 14 SARS coronavirus isolates and common mutations associated with putative origins of infection

YJ Ruan, CL Wei, AE Ling, VB Vega, H Thoreau… - The Lancet, 2003 - thelancet.com
genome sequences of Singapore SARS-CoV isolates and the nine SARS-CoV genomes
Our results show several molecular facets of the SARS coronavirus pertinent to public-health …

The establishment of reference sequence for SARSCoV‐2 and variation analysis

C Wang, Z Liu, Z Chen, X Huang, M Xu… - Journal of medical …, 2020 - Wiley Online Library
… 95 full-length genomic sequences of SARAS-CoV-2 strains … reference sequence by conducting
multiple sequence alignment … In summary, in this study SARS-CoV-2 genomic sequences

On the origin and evolution of SARS-CoV-2

D Singh, SV Yi - Experimental & molecular medicine, 2021 - nature.com
… They compared 44 SARS-CoV-2 genome sequences to the RaTG13 genome. Their
results also suggested that while the majority of the SARS-CoV-2 genome is evolving under …

First detection and genome sequencing of SARSCoV‐2 in an infected cat in France

C Sailleau, M Dumarest… - Transboundary and …, 2020 - Wiley Online Library
SARS-CoV-2 in both serum samples taken 10 days apart. Genome sequence analysis revealed
that the cat SARS-CoV-2 … like most of the French human SARS-CoV-2. This study reports …

Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants

A Crits-Christoph, RS Kantor, MR Olm, ON Whitney… - MBio, 2021 - Am Soc Microbiol
… Viral genome sequencing has guided our understanding of the spread and extent of …
SARS-CoV-2 during the COVID-19 pandemic. SARS-CoV-2 viral genomes are usually sequenced

Genomic evidence for reinfection with SARS-CoV-2: a case study

RL Tillett, JR Sevinsky, PD Hartley… - The Lancet infectious …, 2021 - thelancet.com
… The genome sequence of each sample was constructed using coverage statistics from
BBtools pileup.sh and applyvariants.sh version 38.86, whereby only variants supported by …