High‐coverage SARSCoV‐2 genome sequences acquired by target capture sequencing

S Wen, C Sun, H Zheng, L Wang… - Journal of medical …, 2020 - Wiley Online Library
In this study, we designed a set of SARSCoV‐2 enrichment probes to increase the capacity
for sequence‐based virus detection and obtain the comprehensive genome sequence at …

Coronaviruses and sars-cov-2

M Hasöksüz, S Kilic, F Saraç - Turkish journal of medical …, 2020 - journals.tubitak.gov.tr
Genomic sequences that are very similar to porcine epidemic diarrhoea virus (PEDV) have
been detected in bats. In 2016, a large‐scale outbreak of a disease in pigs in southern China …

SARS-CoV-2 genome sequencing methods differ in their abilities to detect variants from low-viral-load samples

C Lam, K Gray, M Gall, R Sadsad, A Arnott… - Journal of Clinical …, 2021 - Am Soc Microbiol
coronavirus 2 (SARS-CoV-2) genomic surveillance has been vital in understanding the
spread of coronavirus … widely adopted SARS-CoV-2 whole-genome sequencing methods for …

Stability of SARS-CoV-2 phylogenies

Y Turakhia, N De Maio, B Thornlow, L Gozashti… - PLoS …, 2020 - journals.plos.org
… We find that some recurrent mutations in reported SARS-CoV-2 genome sequences have
been observed predominantly or exclusively by single labs, co-localize with commonly used …

The architecture of SARS-CoV-2 transcriptome

D Kim, JY Lee, JS Yang, JW Kim, VN Kim, H Chang - Cell, 2020 - cell.com
… to the canonical genomic and 9 subgenomic RNAs, SARS-CoV-2 … Using nanopore direct
RNA sequencing, we further find at least 41 … of the life cycle and pathogenicity of SARS-CoV-2. …

CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes

DJ Baker, A Aydin, T Le-Viet, GL Kay, S Rudder… - Genome medicine, 2021 - Springer
… flexible method for sequencing SARS-CoV-2 genomes (≤ 96 … by sequencing 2 plates
containing 95 and 59 SARS-CoV-2 … Rapid viral genome sequencing during outbreaks is changing …

Phylogenetic network analysis of SARS-CoV-2 genomes

P Forster, L Forster, C Renfrew… - Proceedings of the …, 2020 - National Acad Sciences
… virus) yield 101 distinct genomic sequences. The phylogenetic … related bat coronavirus, with
96.2% sequence similarity to the … genomes existing alongside their newly mutated daughter …

[HTML][HTML] A genomic perspective on the origin and emergence of SARS-CoV-2

YZ Zhang, EC Holmes - Cell, 2020 - cell.com
… The ongoing pandemic of a new human coronavirus, SARS-CoV-2, … genome sequencing
of the virus. Herein, we describe what genomic data reveal about the emergence SARS-CoV-2 …

Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

RA Bull, TN Adikari, JM Ferguson, JM Hammond… - Nature …, 2020 - nature.com
… high consensus-level sequencing accuracy across the SARS-CoV-2 genome. We used
iVar and Medaka workflows to determine consensus genome sequences for Illumina and ONT …

Evolution patterns of SARS-CoV-2: Snapshot on its genome variants

M Giovanetti, F Benedetti, G Campisi, A Ciccozzi… - Biochemical and …, 2021 - Elsevier
sequence identity with that of other CoVs. Comparative sequence analysis of the SARS-CoV-2
genome indicates striking similarities to that of the Bat-CoV, suggesting a possible bat …