High‐coverage SARS‐CoV‐2 genome sequences acquired by target capture sequencing
S Wen, C Sun, H Zheng, L Wang… - Journal of medical …, 2020 - Wiley Online Library
In this study, we designed a set of SARS‐CoV‐2 enrichment probes to increase the capacity
for sequence‐based virus detection and obtain the comprehensive genome sequence at …
for sequence‐based virus detection and obtain the comprehensive genome sequence at …
Coronaviruses and sars-cov-2
M Hasöksüz, S Kilic, F Saraç - Turkish journal of medical …, 2020 - journals.tubitak.gov.tr
… Genomic sequences that are very similar to porcine epidemic diarrhoea virus (PEDV) have
been detected in bats. In 2016, a large‐scale outbreak of a disease in pigs in southern China …
been detected in bats. In 2016, a large‐scale outbreak of a disease in pigs in southern China …
SARS-CoV-2 genome sequencing methods differ in their abilities to detect variants from low-viral-load samples
… coronavirus 2 (SARS-CoV-2) genomic surveillance has been vital in understanding the
spread of coronavirus … widely adopted SARS-CoV-2 whole-genome sequencing methods for …
spread of coronavirus … widely adopted SARS-CoV-2 whole-genome sequencing methods for …
Stability of SARS-CoV-2 phylogenies
… We find that some recurrent mutations in reported SARS-CoV-2 genome sequences have
been observed predominantly or exclusively by single labs, co-localize with commonly used …
been observed predominantly or exclusively by single labs, co-localize with commonly used …
The architecture of SARS-CoV-2 transcriptome
D Kim, JY Lee, JS Yang, JW Kim, VN Kim, H Chang - Cell, 2020 - cell.com
… to the canonical genomic and 9 subgenomic RNAs, SARS-CoV-2 … Using nanopore direct
RNA sequencing, we further find at least 41 … of the life cycle and pathogenicity of SARS-CoV-2. …
RNA sequencing, we further find at least 41 … of the life cycle and pathogenicity of SARS-CoV-2. …
CoronaHiT: high-throughput sequencing of SARS-CoV-2 genomes
… flexible method for sequencing SARS-CoV-2 genomes (≤ 96 … by sequencing 2 plates
containing 95 and 59 SARS-CoV-2 … Rapid viral genome sequencing during outbreaks is changing …
containing 95 and 59 SARS-CoV-2 … Rapid viral genome sequencing during outbreaks is changing …
Phylogenetic network analysis of SARS-CoV-2 genomes
P Forster, L Forster, C Renfrew… - Proceedings of the …, 2020 - National Acad Sciences
… virus) yield 101 distinct genomic sequences. The phylogenetic … related bat coronavirus, with
96.2% sequence similarity to the … genomes existing alongside their newly mutated daughter …
96.2% sequence similarity to the … genomes existing alongside their newly mutated daughter …
[HTML][HTML] A genomic perspective on the origin and emergence of SARS-CoV-2
YZ Zhang, EC Holmes - Cell, 2020 - cell.com
… The ongoing pandemic of a new human coronavirus, SARS-CoV-2, … genome sequencing
of the virus. Herein, we describe what genomic data reveal about the emergence SARS-CoV-2 …
of the virus. Herein, we describe what genomic data reveal about the emergence SARS-CoV-2 …
Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis
… high consensus-level sequencing accuracy across the SARS-CoV-2 genome. We used
iVar and Medaka workflows to determine consensus genome sequences for Illumina and ONT …
iVar and Medaka workflows to determine consensus genome sequences for Illumina and ONT …
Evolution patterns of SARS-CoV-2: Snapshot on its genome variants
M Giovanetti, F Benedetti, G Campisi, A Ciccozzi… - Biochemical and …, 2021 - Elsevier
… sequence identity with that of other CoVs. Comparative sequence analysis of the SARS-CoV-2
genome indicates striking similarities to that of the Bat-CoV, suggesting a possible bat …
genome indicates striking similarities to that of the Bat-CoV, suggesting a possible bat …