[PDF][PDF] Emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States

NL Washington, K Gangavarapu, M Zeller, A Bolze… - Cell, 2021 - cell.com
sequenced three B.1.1.7 genomes that were detected as part of random SARS-CoV-2 genomic
… of the B.1.1.7 genomes sequenced and the number of sequenced samples with SGTF. …

[HTML][HTML] Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis

RA Bull, TN Adikari, JM Ferguson, JM Hammond… - Nature …, 2020 - nature.com
… high consensus-level sequencing accuracy across the SARS-CoV-2 genome. We used
iVar and Medaka workflows to determine consensus genome sequences for Illumina and ONT …

[HTML][HTML] Genetics and genomics of SARS-CoV-2: A review of the literature with the special focus on genetic diversity and SARS-CoV-2 genome detection

A Rahimi, A Mirzazadeh, S Tavakolpour - Genomics, 2021 - Elsevier
… The genomic sequence of this newly emerged virus is highly … syndrome coronavirus (SARS-CoV)
with a 79.6% sequence … The SARS-CoV-2 genomic sequences exhibit a diverse length …

Transmission of SARS-CoV-2 among healthcare workers and patients in a teaching hospital in the Netherlands confirmed by whole-genome sequencing

S Paltansing, RS Sikkema, SJ De Man… - Journal of Hospital …, 2021 - Elsevier
… (4%) patients tested positive for SARS-CoV-2. Samples from 59 cases were referred for
sequencing, yielding 50 whole-genome sequences from 30 HCWs and 20 patients (Table I). …

The impact of real-time whole-genome sequencing in controlling healthcare-associated SARS-CoV-2 outbreaks

…, COVID-19 Genomics UK (COG-UK) … - The Journal of …, 2022 - academic.oup.com
… Nosocomial severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections
have severely affected bed capacity and patient flow. We utilized whole-genome sequencing (…

[HTML][HTML] First results of a national external quality assessment scheme for the detection of SARS-CoV-2 genome sequences

I Görzer, C Buchta, P Chiba, B Benka, JV Camp… - Journal of Clinical …, 2020 - Elsevier
… tests for the specific detection of SARS-CoV-2 genome sequences in human samples. …
the first SARS-CoV-2 viral genome sequence on January 10 [2] an initial protocol for SARS-CoV-2 …

[HTML][HTML] Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

LW Meredith, WL Hamilton, B Warne… - The Lancet infectious …, 2020 - thelancet.com
genome sequencing to systematically investigate SARS-CoV-2 health-care associated
infections, integrating genomic … In 6 weeks, we sequenced 1000 genomes, including 70% of all …

[PDF][PDF] A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samples

T Liu, Z Chen, W Chen, X Chen, M Hosseini, Z Yang… - IScience, 2021 - cell.com
… emerging new type of coronavirus that is … -genome sequencing (WGS) of SARS-CoV-2
plays a critical role in understanding the disease. Performance variation exists across SARS-CoV-…

[HTML][HTML] Genome-wide identification and characterization of point mutations in the SARS-CoV-2 genome

JS Kim, JH Jang, JM Kim, YS Chung… - Osong public health …, 2020 - ncbi.nlm.nih.gov
… of 4,254 SARS-CoV-2 genome sequences and … genome sequences with low-quality reads,
base calling errors, unsolved nucleotides as “N”, and small gaps. To investigate the genome-…

[HTML][HTML] Genome sequencing of SARS-CoV-2 allows monitoring of variants of concern through wastewater

M Herold, AF d'Hérouël, P May, F Delogu… - Water, 2021 - mdpi.com
SARS-CoV-2 lineages circulating in the Luxembourg population from genomic sequencing
of … present in patient-derived consensus sequences to corresponding mutations detected in …