The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos
O Bogdanović, A Fernández-Miñán, JJ Tena… - Methods, 2013 - Elsevier
… -regulated DNA methylation remodeling … DNA methylation studies of early zebrafish
development rendering this method highly suitable for the global assessment of DNA methylation in …
development rendering this method highly suitable for the global assessment of DNA methylation in …
[HTML][HTML] High resolution imaging of DNA methylation dynamics using a zebrafish reporter
R Zhang, L Liu, Y Yao, F Fei, F Wang, Q Yang, Y Gui… - Scientific Reports, 2017 - nature.com
… of DNA methylation, we generated a transgenic zebrafish reporter of DNA methylation (…
of DNA methylation, and time-lapse imaging at the blastula stage showed that the level of …
of DNA methylation, and time-lapse imaging at the blastula stage showed that the level of …
[HTML][HTML] Developmental accumulation of gene body and transposon non-CpG methylation in the zebrafish brain
SE Ross, D Hesselson, O Bogdanovic - Frontiers in Cell and …, 2021 - frontiersin.org
… DNA methylation predominantly occurs at CG dinucleotides in vertebrate genomes; however,
non-CG methylation (mCH) is also detectable in vertebrate tissues, most notably in the …
non-CG methylation (mCH) is also detectable in vertebrate tissues, most notably in the …
The specific alteration of histone methylation profiles by DZNep during early zebrafish development
… We first investigated the effect of DZNep on early zebrafish development by growing
dechorionated 1–2 cell stage embryos in increasing DZNep concentrations for up to 120 h post-…
dechorionated 1–2 cell stage embryos in increasing DZNep concentrations for up to 120 h post-…
DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development
AD Marchione, Z Thompson… - … in functional genomics, 2021 - academic.oup.com
… , including methylation and acetylation of specific lysine (K) residues, are established on
histones [3]. Genomes undergo global methylation changes to stabilize DNA methylation levels …
histones [3]. Genomes undergo global methylation changes to stabilize DNA methylation levels …
Packaging development: how chromatin controls transcription in zebrafish embryogenesis
JA Horsfield - Biochemical Society Transactions, 2019 - portlandpress.com
… transcriptional programmes during early zebrafish development, patterning and … DNA
methylation patterns of the two parental genomes by passively deterring DNA methylation …
methylation patterns of the two parental genomes by passively deterring DNA methylation …
[HTML][HTML] UHRF1 regulation of Dnmt1 is required for pre-gastrula zebrafish development
… largely mediate maintenance DNA methylation and Uhrf1 is … modifiers regulate early zebrafish
development and … , we conclude that bulk DNA methylation is not the primary mechanism. …
development and … , we conclude that bulk DNA methylation is not the primary mechanism. …
Dynamics of DNA hydroxymethylation in zebrafish
… hmC is not present during early zebrafish development, 16,21 … Even though the DNA
methylation level in the zebrafish … maternal genome leads to, our results show a lower methylation …
methylation level in the zebrafish … maternal genome leads to, our results show a lower methylation …
Molecular evolution of zebrafish dnmt3 genes and thermal plasticity of their expression during embryonic development
C Campos, LMP Valente, JMO Fernandes - Gene, 2012 - Elsevier
… In mammals, proper patterns of DNA methylation are essential not only for … DNA methylation
reprogramming has been investigated. Significant differences in genome DNA methylation …
reprogramming has been investigated. Significant differences in genome DNA methylation …
[HTML][HTML] Ionising radiation induces promoter DNA hypomethylation and perturbs transcriptional activity of genes involved in morphogenesis during gastrulation in …
S Murat El Houdigui, C Adam-Guillermin… - International Journal of …, 2020 - mdpi.com
… To assess whether IR can modify epigenetic marks and thereby modulate transcriptional
activity, we analysed DNA methylation at the whole genome scale using WGBS on shield stage …
activity, we analysed DNA methylation at the whole genome scale using WGBS on shield stage …