Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

M Chiara, AM D'Erchia, C Gissi… - Briefings in …, 2021 - academic.oup.com
… If the aim of the study is to obtain an accurate representation of the genomic sequence of
a novel strain of SARS-CoV-2, de-novo assembly should always be preferred to reference-…

Genomic characterization of a novel SARS-CoV-2

RA Khailany, M Safdar, M Ozaslan - Gene reports, 2020 - Elsevier
… extent of molecular variation between the recently sequenced genomes of SARS-CoV-2. …
NC_045512 genome sequence was used for reference and the genomic coordinate in this …

[PDF][PDF] Genomic sequencing of SARS-CoV-2: a guide to implementation for maximum impact on public health, 8 January 2021

World Health Organization - 2021 - apps.who.int
… This section reviews how SARS-CoV-2 genome sequencing has been used at different
phases of the COVID-19 pandemic and suggests possible future applications. It also provides …

The genetic sequence, origin, and diagnosis of SARS-CoV-2

H Wang, X Li, T Li, S Zhang, L Wang, X Wu… - European Journal of …, 2020 - Springer
… of full-length genome sequences obtained from infected patients showed that SARS-CoV-2
is similar to severe acute respiratory syndrome coronavirus (SARS-CoV) and uses the same …

Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

LW Meredith, WL Hamilton, B Warne… - The Lancet infectious …, 2020 - thelancet.com
genome sequencing to systematically investigate SARS-CoV-2 health-care associated
infections, integrating genomic … In 6 weeks, we sequenced 1000 genomes, including 70% of all …

Genomic evidence for reinfection with SARS-CoV-2: a case study

RL Tillett, JR Sevinsky, PD Hartley… - The Lancet infectious …, 2021 - thelancet.com
… We did next-generation sequencing of SARS-CoV-2 … The patient had two positive tests for
SARS-CoV-2, the first on … Genomic analysis of SARS-CoV-2 showed genetically significant …

[PDF][PDF] SARS-CoV-2 genomic sequencing for public health goals: interim guidance, 8 January 2021

World Health Organization - 2021 - apps.who.int
… 对 SARS-CoV-2 基因序列和相关元数据的全球监测有助于应对 COVID-19 疫情.这包括跟踪
SARSCoV-… 在首次识别SARSCoV-2 病毒后的一年内,超过 28 万个全基因组序列通过可公开访问的…

Full-genome sequences of the first two SARS-CoV-2 viruses from India

PD Yadav, VA Potdar, ML Choudhary… - Indian Journal of …, 2020 - journals.lww.com
coronavirus 2 (SARS-CoV-2) has globally affected 195 countries. In India, suspected cases
were screened for SARS-CoV-… study was to characterize SARS-CoV-2 sequences from three …

Genome sequencing of sewage detects regionally prevalent SARS-CoV-2 variants

A Crits-Christoph, RS Kantor, MR Olm, ON Whitney… - MBio, 2021 - Am Soc Microbiol
… Viral genome sequencing has guided our understanding of the spread and extent of …
SARS-CoV-2 during the COVID-19 pandemic. SARS-CoV-2 viral genomes are usually sequenced

[HTML][HTML] Genomic sequencing effort for SARS-CoV-2 by country during the pandemic

Y Furuse - International Journal of Infectious Diseases, 2021 - Elsevier
SARS-CoV-2 genomic sequences per reported COVID-19 case varied widely among countries.
Iceland sequenced … each country’s genomic sequencing efforts of SARS-CoV-2 from the …