[HTML][HTML] The emergence, genomic diversity and global spread of SARS-CoV-2

J Li, S Lai, GF Gao, W Shi - Nature, 2021 - nature.com
… -length genome sequences of SARS-CoV-2 collected from GISAID as of 12 May 2021. A
maximum likelihood tree of 1,715 representative high-quality SARS-CoV-2 sequences carrying …

The establishment of reference sequence for SARSCoV‐2 and variation analysis

C Wang, Z Liu, Z Chen, X Huang, M Xu… - Journal of medical …, 2020 - Wiley Online Library
… 95 full-length genomic sequences of SARAS-CoV-2 strains … reference sequence by conducting
multiple sequence alignment … In summary, in this study SARS-CoV-2 genomic sequences

[HTML][HTML] Full-genome sequences of the first two SARS-CoV-2 viruses from India

PD Yadav, VA Potdar, ML Choudhary… - Indian Journal of …, 2020 - journals.lww.com
coronavirus 2 (SARS-CoV-2) has globally affected 195 countries. In India, suspected cases
were screened for SARS-CoV-… study was to characterize SARS-CoV-2 sequences from three …

[HTML][HTML] Genomic characteristics and clinical effect of the emergent SARS-CoV-2 B. 1.1. 7 lineage in London, UK: a whole-genome sequencing and hospital-based …

D Frampton, T Rampling, A Cross, H Bailey… - The Lancet infectious …, 2021 - thelancet.com
… The lower observed diversity within the SARS-CoV-2 sequenced genomes included in this
study is consistent with B.1.1.7 transmission occurring more readily during early infection. A …

[HTML][HTML] Geographic and genomic distribution of SARS-CoV-2 mutations

D Mercatelli, FM Giorgi - Frontiers in microbiology, 2020 - frontiersin.org
… We provide, as Supplementary File 8, also a country-wise analysis of the 32 countries with
most SARS-CoV-2 full genome sequences available. As a general observation, countries …

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

L Van Dorp, M Acman, D Richard, LP Shaw… - Infection, Genetics and …, 2020 - Elsevier
… To further validate the homoplasy detection method applied to the alignment of the 7666
SARS-CoV-2 genome assemblies, we took advantage of the genome sequences for which raw …

[HTML][HTML] Rapid SARS-CoV-2 whole-genome sequencing and analysis for informed public health decision-making in the Netherlands

BB Oude Munnink, DF Nieuwenhuijse, M Stein… - Nature medicine, 2020 - nature.com
… of the extent of SARS-CoV-2 … of SARS-CoV-2 in the Netherlands. We demonstrate how
these data were generated and analyzed, and how SARS-CoV-2 whole-genome sequencing, in …

[PDF][PDF] Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings

NR Faria, IM Claro, D Candido, LAM Franco… - Virological, 2021 - academia.edu
… Therefore, SARS-CoV-2 genome sequencing from more recent cases could help to shed …
A full list acknowledging the authors submitting B1.1.28 genome sequence data used in this …

[HTML][HTML] Whole-genome sequencing of SARS-CoV-2 reveals the detection of G614 variant in Pakistan

M Umair, A Ikram, M Salman, A Khurshid, M Alam… - PLoS …, 2021 - journals.plos.org
… In summary, we report 29 mutations in the genomic sequences of Pakistani SARS-CoV-2
strains of GH and S clades. Both the clades showed missense mutations in the spike gene; …

[HTML][HTML] Global disparities in SARS-CoV-2 genomic surveillance

…, Bulgarian SARS-CoV-2 sequencing group … - Nature …, 2022 - nature.com
SARS-CoV-2 genome sequencing intensity, we explored the percentage of COVID-19 cases
sequenced … least 5% of SARS-CoV-2 positive samples should be sequenced to detect viral …