Detection of SARS-CoV-2 from patient fecal samples by whole genome sequencing

A Papoutsis, T Borody, S Dolai, J Daniels, S Steinberg… - Gut pathogens, 2021 - Springer
… to execute whole genome analysis to characterize SARS-CoV-2 mutational … genome
sequencing (WGS) of SARS-CoV-2 from stool samples. Herein we were able to identify SARS-CoV-…

Classification of SARS-CoV-2 viral genome sequences using Neurochaos Learning

NB Harikrishnan, SY Pranay, N Nagaraj - Medical & Biological …, 2022 - Springer
… \) for the classification of SARS-CoV-2 from SARS-CoV-1 genome sequences. We compare
the … We foresee promising future applications in genome classification using NL with novel …

[HTML][HTML] Insights into SARS-CoV-2 genome, structure, evolution, pathogenesis and therapies: Structural genomics approach

AAT Naqvi, K Fatima, T Mohammad, U Fatima… - … et Biophysica Acta (BBA …, 2020 - Elsevier
… Our analysis suggests a minimal variation in the genome sequence of SARS-CoV-2, may
be responsible for a drastic change in the structures of target proteins, which makes available …

[HTML][HTML] Virus isolation from the first patient with SARS-CoV-2 in Korea

WB Park, NJ Kwon, SJ Choi, CK Kang… - Journal of Korean …, 2020 - ncbi.nlm.nih.gov
genome sequences showed that it clustered with other SARS-CoV-2 reported from Wuhan.
… isolation of SARS-CoV-2 using Vero cells from a patient entering Korea from Wuhan, China. …

Transmission of SARS-CoV-2 among healthcare workers and patients in a teaching hospital in the Netherlands confirmed by whole-genome sequencing

S Paltansing, RS Sikkema, SJ De Man… - Journal of Hospital …, 2021 - Elsevier
… (4%) patients tested positive for SARS-CoV-2. Samples from 59 cases were referred for
sequencing, yielding 50 whole-genome sequences from 30 HCWs and 20 patients (Table I). …

A novel and expanding SARS-CoV-2 variant, B. 1.526, identified in New York

MK Annavajhala, H Mohri, P Wang, M Nair, JE Zucker… - MedRxiv, 2021 - medrxiv.org
… Within our genomic … of SARS-CoV-2 variants identified by sequencing and alignment of
key spike mutations. Unique patterns of spike protein mutations present in genomes sequenced

High‐coverage SARSCoV‐2 genome sequences acquired by target capture sequencing

S Wen, C Sun, H Zheng, L Wang… - Journal of medical …, 2020 - Wiley Online Library
SARS-CoV-2 genomes (mean depth being 186 869× and minimum coverage 13 816×). Only
the merged sequence (… , we also reconstructed three SARS-CoV-2 genomes (mean depth …

Genomic perspectives on the emerging SARS-CoV-2 omicron variant

W Ma, J Yang, H Fu, C Su, C Yu, Q Wang… - Genomics …, 2022 - academic.oup.com
… This study analyzed the viral genome sequencing data of 108 samples collected from patients
infected with Omicron. First, we found that the enrichment efficiency of viral nucleic acids …

An updated analysis of variations in SARS-CoV-2 genome

OM Uğurel, O Ata, D BALIK - Turkish Journal of Biology, 2020 - journals.tubitak.gov.tr
… were evaluated for validation according to genomic positions … In this study, 30366 SARS-CoV-2
isolate genome sequences … of 30366 SARS-CoV-2 isolate genome sequences produced …

Genomic epidemiology of the first wave of SARS-CoV-2 in Italy

F Di Giallonardo, S Duchene, I Puglia, V Curini… - Viruses, 2020 - mdpi.com
… the genomic epidemiology of SARS-CoV-2 in Italy covering the first wave of infection. We
generated 191 new full-length genomes, … regions, we combined genome sequences into larger …