… Hence, we aimed here to provide simple quality control criteria for SARS-CoV-2 sequencing
… investigated 647 SARS-CoV-2 genomes obtained over 10 tiled amplicons sequencing runs. …

… Nosocomial severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections
have severely affected bed capacity and patient flow. We utilized whole-genome sequencing (…

… samples in a single sequencing run without compromising … for over 65,000 SARS-CoV-2
whole genome sequences from … , as part of an ongoing national genomics surveillance effort. …

… Here we present the results of a pilot SARS-CoV-2 air sampling … of the complete SARS-CoV-2
genomic sequence that was … , this is the first complete genomic sequence of SARS-CoV-2 …

… We performed amplicon sequencing of the SARS-CoV-2 genome with amplicons ranging
from 400 bp (top) to 2000 bp in size (bottom). Amplicon sets are shown as grey bars, with the …

… For each annotated ORF in the reference genome of SARS-CoV-2 (NC_045512), we extracted
the orthologous sequences in human SARS-CoV, four bat SARS-related coronaviruses (…

… 12,343 SARS-CoV-2 genome sequences isolated from … by comparing with the reference
SARS-CoV-2 sequence. Through a … Our findings suggest that SARS-CoV-2 mutations as well as …

… been previously shown to contain SARS-CoV-2 in healthcare settings [30, 31] and in homes
[22]. In addition, we sequenced partial and complete genomes from surfaces and compared …

… , we used a software, minimap2 (24), to pairwise align SARS-CoV-2 sequences with the
reference genome Wuhan-Hu-1. Minimap2 is a fast and efficient pairwise aligner that can also …

… The viral genome sequences used in this paper are publicly available from GISAID (http://…
for the GISAID genome sequences used to develop this work is available at https://cov-lineages…