… Nosocomial severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infections
have severely affected bed capacity and patient flow. We utilized whole-genome sequencing (…

… SARS-CoV-2 lineages circulating in the Luxembourg population from genomic sequencing
of … present in patient-derived consensus sequences to corresponding mutations detected in …

… spreading worldwide and resulting in the coronavirus disease 2019 (COVID-19) pandemic
(Zhu et al. 2020). Whole-genome sequencing (WGS) of SARS-CoV-2 has played a major role …

… used for whole genome sequencing (WGS) of SARS-CoV-2 and can be … SARS-CoV-2
genomes were generated using a metagenomic approach given the lack of reference genome …

… , we used a software, minimap2 (24), to pairwise align SARS-CoV-2 sequences with the
reference genome Wuhan-Hu-1. Minimap2 is a fast and efficient pairwise aligner that can also …

… Total 558 complete genome sequences of the SARS-CoV-2 strains from the infected
individuals are retrieved from the GISAID database [26] as of March 23, 2020. Only the complete …

… We consider SARS CoV-2 gene sequences as patterns of letters … sequences in a similar
way to text data. We adopt the procedure by [22] to translate DNA sequences into sequences of …

… , 768 complete genomic sequences of SARS Cov-2 have … sequences (A1, A1a, A2, A2a,
A3, A5, B, B1, B2 and B4) [5]. Here, we report the complete genome sequence of SARS-CoV-2 …

… genomes, including the genomes sequenced in this study (n = 3,866) sampled from 26
December 2019 to 28 June 2021 (Figs. 2c and 3). A date-stamped phylogeny of these data …

… -2 using amplicon- and capture-based whole-genome sequencing… for genome sequencing
and analyses of SARS-CoV-2 and … for genome sequencing and analyses of SARS-CoV-2 and …