Global landscape of SARS-CoV-2 genomic surveillance and data sharing

Z Chen, AS Azman, X Chen, J Zou, Y Tian, R Sun… - Nature …, 2022 - nature.com
Genomic surveillance has shaped our … syndrome coronavirus 2 (SARS-CoV-2) variants.
We performed a global landscape analysis on SARS-CoV-2 genomic surveillance and genomic

[HTML][HTML] An integrated national scale SARS-CoV-2 genomic surveillance network

T COVID - The Lancet. Microbe, 2020 - ncbi.nlm.nih.gov
… severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) for up … SARS-CoV-2
transmission, identify viral mutations, and integrate with health data to assess how the viral genome

Global disparities in SARS-CoV-2 genomic surveillance

…, Fiocruz COVID-19 Genomic Surveillance … - Nature …, 2022 - nature.com
genomic data 34 , there are striking differences in the intensity of genomic surveillance
Here we examine global publicly-accessible SARS-CoV-2 genomic surveillance data 2 years of …

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

X Deng, W Gu, S Federman, L Du Plessis, OG Pybus… - Science, 2020 - science.org
… the 36 SARS-CoV-2 genomes from California generated in this study were dispersed across
the evolutionary tree of SARS-CoV-2 that was constructed from 789 worldwide genomes

[HTML][HTML] Global SARS-CoV-2 genomic surveillance: What we have learned (so far)

S Tosta, K Moreno, G Schuab, V Fonseca… - Infection, Genetics and …, 2023 - Elsevier
… the global history of SARS-CoV-2 during the first thirty-four months of viral circulation and
evolution, focusing particularly on how global genomic surveillance systems enabled the …

Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

LW Meredith, WL Hamilton, B Warne… - The Lancet infectious …, 2020 - thelancet.com
… We sought to embed genomic surveillance as part of an active SARS-CoV-2 infection control
process in a large UK hospital. A rapid sequencing workflow was established on March 23, …

Genomic surveillance, evolution and global transmission of SARS-CoV-2 during 2019–2022

N Sharif, KJ Alzahrani, SN Ahmed, A Khan, HJ Banjer… - PLoS …, 2022 - journals.plos.org
… This study focused to conduct worldwide genomic surveillance. About 7.6 million genomic
data … This study will help to understand the genomic diversity, evolution and the impact of the …

The next phase of SARS-CoV-2 surveillance: real-time molecular epidemiology

BB Oude Munnink, N Worp, DF Nieuwenhuijse… - Nature medicine, 2021 - nature.com
… This Review summarizes the genomic surveillance efforts as well as the current nomenclature
and detection of variants of concern (VOC) and variants of interest (VOI). In addition, the …

Challenges and opportunities for global genomic surveillance strategies in the COVID-19 era

T Ling-Hu, E Rios-Guzman, R Lorenzo-Redondo… - Viruses, 2022 - mdpi.com
… In this review, we outline current SARS-CoV-2 global genomic surveillance methods and
assess roadblocks at each step of the pipeline to identify potential solutions. Evaluating the …

A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

E Wilkinson, M Giovanetti, H Tegally, JE San… - Science, 2021 - science.org
Genomic surveillance has also been critical for monitoring ongoing SARS-CoV-2 evolution
and detection of new SARS-CoV… analyses of SARS-CoV-2 genomic data from 33 African …